Subcellular Localization
min:
: max
Winner_takes_all: extracellular, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os03t0298400-01 | Rice | plasma membrane | 96.86 | 96.0 |
| TraesCS4D01G190600.1 | Wheat | cytosol, golgi | 95.52 | 94.67 |
| HORVU4Hr1G055060.1 | Barley | cytosol | 95.52 | 94.67 |
| Zm00001d022573_P001 | Maize | cytosol, extracellular, plasma membrane | 94.84 | 94.63 |
| TraesCS4B01G189200.1 | Wheat | cytosol | 95.29 | 94.44 |
| TraesCS4A01G115000.1 | Wheat | cytosol | 95.29 | 94.44 |
| GSMUA_Achr4P05850_001 | Banana | cytosol | 88.12 | 92.69 |
| KRG95799 | Soybean | cytosol, nucleus | 91.93 | 91.93 |
| KRH67524 | Soybean | nucleus | 91.7 | 91.7 |
| GSMUA_Achr4P05840_001 | Banana | cytosol | 86.55 | 91.69 |
| KRH32292 | Soybean | cytosol, nucleus | 91.03 | 91.65 |
| KRH19693 | Soybean | cytosol | 91.03 | 91.65 |
| VIT_07s0005g05160.t01 | Wine grape | cytosol | 91.26 | 91.46 |
| Solyc06g083620.2.1 | Tomato | nucleus, plastid | 91.03 | 91.44 |
| PGSC0003DMT400051744 | Potato | cytosol | 90.58 | 90.99 |
| AT2G20140.1 | Thale cress | cytosol | 90.36 | 90.97 |
| AT4G29040.1 | Thale cress | cytosol | 90.36 | 90.97 |
| Zm00001d007215_P001 | Maize | cytosol | 94.62 | 90.95 |
| PGSC0003DMT400040872 | Potato | cytosol | 90.36 | 90.77 |
| CDY35245 | Canola | cytosol | 90.13 | 90.74 |
| Bra011079.1-P | Field mustard | cytosol | 90.13 | 90.74 |
| CDY06847 | Canola | cytosol | 89.91 | 90.52 |
| CDX97472 | Canola | cytosol | 90.13 | 90.34 |
| CDX92914 | Canola | cytosol, extracellular | 89.69 | 90.29 |
| CDY14224 | Canola | cytosol | 89.69 | 89.89 |
| Bra010342.1-P | Field mustard | cytosol | 89.69 | 89.89 |
| CDY59958 | Canola | cytosol | 61.88 | 75.82 |
| Bra024165.1-P | Field mustard | cytosol | 54.71 | 75.54 |
| Zm00001d045163_P001 | Maize | mitochondrion | 20.4 | 51.7 |
| Zm00001d050616_P002 | Maize | plastid | 41.93 | 43.09 |
| Zm00001d037481_P003 | Maize | cytosol, extracellular, plasma membrane | 40.58 | 42.09 |
| Zm00001d046539_P002 | Maize | cytosol, mitochondrion | 37.22 | 41.71 |
| Zm00001d015788_P001 | Maize | plasma membrane | 37.22 | 41.5 |
| Zm00001d016439_P003 | Maize | cytosol, extracellular, plasma membrane | 39.24 | 41.47 |
| Zm00001d053616_P002 | Maize | cytosol | 39.24 | 41.47 |
| Zm00001d053649_P002 | Maize | cytosol, mitochondrion | 37.0 | 41.25 |
| Zm00001d018409_P007 | Maize | cytosol | 39.69 | 39.51 |
| Zm00001d018309_P003 | Maize | cytosol | 37.44 | 39.2 |
| Zm00001d052078_P003 | Maize | cytosol | 37.44 | 36.54 |
| Zm00001d015886_P002 | Maize | cytosol | 34.08 | 28.04 |
| Zm00001d032117_P001 | Maize | cytosol | 18.83 | 26.25 |
| Zm00001d025776_P002 | Maize | cytosol | 28.7 | 22.54 |
| Zm00001d009592_P001 | Maize | cytosol | 10.99 | 18.7 |
| Zm00001d035913_P002 | Maize | cytosol, mitochondrion | 26.91 | 16.37 |
| Zm00001d045566_P001 | Maize | cytosol, mitochondrion | 27.58 | 16.02 |
| Zm00001d027707_P001 | Maize | cytosol, plasma membrane | 28.7 | 15.86 |
| Zm00001d048409_P001 | Maize | cytosol | 28.48 | 15.8 |
| Zm00001d032859_P006 | Maize | plasma membrane | 28.48 | 15.68 |
| Zm00001d014124_P001 | Maize | cytosol, plasma membrane | 28.25 | 15.54 |
| Zm00001d050303_P001 | Maize | cytosol | 27.35 | 15.44 |
| Zm00001d022096_P002 | Maize | mitochondrion | 25.56 | 15.06 |
| Zm00001d049140_P006 | Maize | cytosol, plastid | 27.8 | 12.34 |
| Zm00001d002462_P010 | Maize | mitochondrion | 26.91 | 11.29 |
| Zm00001d049974_P004 | Maize | peroxisome | 23.32 | 9.33 |
| Zm00001d002717_P001 | Maize | mitochondrion | 7.17 | 7.84 |
| Zm00001d053999_P001 | Maize | cytosol | 6.95 | 7.54 |
| Zm00001d027244_P001 | Maize | cytosol | 4.93 | 6.01 |
| Zm00001d033491_P001 | Maize | cytosol, plasma membrane, plastid | 1.79 | 3.16 |
Protein Annotations
| Gene3D:1.10.8.60 | EntrezGene:100279843 | MapMan:19.2.6.2.1.2 | Gene3D:2.40.50.140 | InterPro:26S_Psome_P45-like | InterPro:26S_subunit_4 |
| Gene3D:3.40.50.300 | InterPro:AAA+_ATPase | InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | UniProt:B8A0A6 | EMBL:BT054998 |
| GO:GO:0000166 | GO:GO:0000502 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006508 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008233 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 |
| GO:GO:0030163 | GO:GO:0036402 | GO:GO:1901800 | ProteinID:ONL97061.1 | InterPro:P-loop_NTPase | PFAM:PF00004 |
| ScanProsite:PS00674 | PANTHER:PTHR23073 | PANTHER:PTHR23073:SF42 | SMART:SM00382 | SUPFAM:SSF52540 | TIGRFAMs:TIGR01242 |
| UniParc:UPI0001917424 | EnsemblPlantsGene:Zm00001d028801 | EnsemblPlants:Zm00001d028801_P001 | EnsemblPlants:Zm00001d028801_T001 | SEG:seg | : |
Description
26S proteasome regulatory subunit 4 homolog A
Coordinates
chr1:+:46819355..46822959
Molecular Weight (calculated)
49450.9 Da
IEP (calculated)
6.309
GRAVY (calculated)
-0.411
Length
446 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQGSPGGMG KQPGLPGDRK QGDGKKEKKY EPPAAPSRVG RKQKRQKGSE AAARLPAVAP LSKCRLRLLK LERVKDYLLM EEEFVASQER LRPSEDKTEE
101: DRSKVDDLRG TPMNVGSLEE IIDESHAIVS SSVGPEYYVG ILSFVDKDQL EPGCAILMHN KVLSVVGILQ DEVDPMVSVM KVEKAPLESY ADIGGLDAQI
201: QEIKEAVELP LTHPELYEDI GIRPPKGVIL YGEPGTGKTL LAKAVANSTS ATFLRVVGSE LIQKYLGDGP KLVRELFRVA DDLSPSIVFI DEIDAVGTKR
301: YDAHSGGERE IQRTMLELLN QLDGFDSRGD VKVILATNRI ESLDPALLRP GRIDRKIEFP LPDVKTRRRI FQIHTSKMTL ADDVNLEEFI MSKDEFSGAD
401: IKAICTEAGL LALRERRMKV THADFKKAKE KVMFKKKEGV PEGLYM
101: DRSKVDDLRG TPMNVGSLEE IIDESHAIVS SSVGPEYYVG ILSFVDKDQL EPGCAILMHN KVLSVVGILQ DEVDPMVSVM KVEKAPLESY ADIGGLDAQI
201: QEIKEAVELP LTHPELYEDI GIRPPKGVIL YGEPGTGKTL LAKAVANSTS ATFLRVVGSE LIQKYLGDGP KLVRELFRVA DDLSPSIVFI DEIDAVGTKR
301: YDAHSGGERE IQRTMLELLN QLDGFDSRGD VKVILATNRI ESLDPALLRP GRIDRKIEFP LPDVKTRRRI FQIHTSKMTL ADDVNLEEFI MSKDEFSGAD
401: IKAICTEAGL LALRERRMKV THADFKKAKE KVMFKKKEGV PEGLYM
001: MGQGPSGGLN RQGDRKPDGG DKKEKKFEPA APPARVGRKQ RKQKGPEAAA RLPTVTPSTK CKLRLLKLER IKDYLLMEEE FVANQERLKP QEEKAEEDRS
101: KVDDLRGTPM SVGNLEELID ENHAIVSSSV GPEYYVGILS FVDKDQLEPG CSILMHNKVL SVVGILQDEV DPMVSVMKVE KAPLESYADI GGLEAQIQEI
201: KEAVELPLTH PELYEDIGIK PPKGVILYGE PGTGKTLLAK AVANSTSATF LRVVGSELIQ KYLGDGPKLV RELFRVADDL SPSIVFIDEI DAVGTKRYDA
301: HSGGEREIQR TMLELLNQLD GFDSRGDVKV ILATNRIESL DPALLRPGRI DRKIEFPLPD IKTRRRIFQI HTSKMTLSED VNLEEFVMTK DEFSGADIKA
401: ICTEAGLLAL RERRMKVTHP DFKKAKEKVM FKKKEGVPEG LYM
101: KVDDLRGTPM SVGNLEELID ENHAIVSSSV GPEYYVGILS FVDKDQLEPG CSILMHNKVL SVVGILQDEV DPMVSVMKVE KAPLESYADI GGLEAQIQEI
201: KEAVELPLTH PELYEDIGIK PPKGVILYGE PGTGKTLLAK AVANSTSATF LRVVGSELIQ KYLGDGPKLV RELFRVADDL SPSIVFIDEI DAVGTKRYDA
301: HSGGEREIQR TMLELLNQLD GFDSRGDVKV ILATNRIESL DPALLRPGRI DRKIEFPLPD IKTRRRIFQI HTSKMTLSED VNLEEFVMTK DEFSGADIKA
401: ICTEAGLLAL RERRMKVTHP DFKKAKEKVM FKKKEGVPEG LYM
Arabidopsis Description
RPT2ARPT2a [Source:UniProtKB/TrEMBL;Acc:A0A178V3V3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.