Factsheet for Zm00001d018309_P003

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0192600-01	Rice	cytosol, nucleus, plasma membrane, plastid	100.0	100.0
EES01223	Sorghum	cytosol	99.77	99.77
TraesCS7D01G157200.1	Wheat	cytosol	98.83	98.83
TraesCS7B01G060900.1	Wheat	golgi	98.83	98.83
TraesCS7A01G156800.1	Wheat	cytosol	98.83	98.83
Bra005023.1-P	Field mustard	cytosol	55.4	98.74
GSMUA_AchrUn_...	Banana	cytosol	97.89	98.12
GSMUA_Achr8P16830_001	Banana	cytosol	97.89	98.12
Solyc03g123730.2.1	Tomato	nucleus	97.89	97.43
PGSC0003DMT400023656	Potato	cytosol	97.89	97.43
VIT_09s0002g00170.t01	Wine grape	cytosol	97.18	97.18
KRH69005	Soybean	nucleus	97.18	97.18
CDY24076	Canola	cytosol	97.18	97.18
CDY36602	Canola	cytosol	97.18	97.18
AT1G53750.1	Thale cress	cytosol	96.95	96.95
CDY30665	Canola	cytosol	96.95	96.95
Bra039688.1-P	Field mustard	cytosol	96.95	96.95
PGSC0003DMT400012446	Potato	cytosol	97.42	96.74
CDY25685	Canola	cytosol	96.01	96.01
CDY02494	Canola	cytosol	96.01	96.01
Bra030922.1-P	Field mustard	cytosol	96.01	96.01
CDX74842	Canola	cytosol	92.25	95.39
CDY20470	Canola	cytosol, plasma membrane	95.07	95.07
HORVU7Hr1G032070.1	Barley	cytosol	98.36	94.37
Bra040569.1-P	Field mustard	cytosol	95.07	93.53
Zm00001d052078_P003	Maize	cytosol	100.0	93.22
CDY08201	Canola	cytosol	75.82	90.99
CDY30663	Canola	cytosol	77.93	76.85
AT1G53780.2	Thale cress	cytosol	83.33	57.26
Zm00001d045163_P001	Maize	mitochondrion	20.42	49.43
Zm00001d053616_P002	Maize	cytosol	44.84	45.26
Zm00001d016439_P003	Maize	cytosol, extracellular, plasma membrane	44.84	45.26
Zm00001d053649_P002	Maize	cytosol, mitochondrion	38.5	41.0
Zm00001d015788_P001	Maize	plasma membrane	38.5	41.0
Zm00001d046539_P002	Maize	cytosol, mitochondrion	38.03	40.7
Zm00001d037481_P003	Maize	cytosol, extracellular, plasma membrane	39.67	39.3
Zm00001d028801_P001	Maize	cytosol, extracellular	39.2	37.44
Zm00001d022573_P001	Maize	cytosol, extracellular, plasma membrane	39.2	37.36
Zm00001d018409_P007	Maize	cytosol	38.5	36.61
Zm00001d007215_P001	Maize	cytosol	39.2	35.99
Zm00001d050616_P002	Maize	plastid	36.62	35.94
Zm00001d032117_P001	Maize	cytosol	21.13	28.12
Zm00001d015886_P002	Maize	cytosol	28.87	22.69
Zm00001d025776_P002	Maize	cytosol	28.64	21.48
Zm00001d009592_P001	Maize	cytosol	13.15	21.37
Zm00001d027707_P001	Maize	cytosol, plasma membrane	32.86	17.35
Zm00001d048409_P001	Maize	cytosol	32.63	17.29
Zm00001d032859_P006	Maize	plasma membrane	32.86	17.28
Zm00001d014124_P001	Maize	cytosol, plasma membrane	32.86	17.26
Zm00001d035913_P002	Maize	cytosol, mitochondrion	29.34	17.05
Zm00001d050303_P001	Maize	cytosol	31.46	16.96
Zm00001d045566_P001	Maize	cytosol, mitochondrion	29.58	16.41
Zm00001d022096_P002	Maize	mitochondrion	27.93	15.72
Zm00001d049140_P006	Maize	cytosol, plastid	30.75	13.03
Zm00001d002462_P010	Maize	mitochondrion	26.76	10.72
Zm00001d049974_P004	Maize	peroxisome	22.77	8.7
Zm00001d002717_P001	Maize	mitochondrion	7.28	7.6
Zm00001d053999_P001	Maize	cytosol	7.28	7.54
Zm00001d027244_P001	Maize	cytosol	4.93	5.74
Zm00001d033491_P001	Maize	cytosol, plasma membrane, plastid	1.17	1.98

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:100272769	EntrezGene:100274064	MapMan:19.2.6.2.1.1	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like
Gene3D:3.40.50.300	InterPro:AAA+_ATPase	ProteinID:AQK56067.1	ProteinID:AQK75530.1	ProteinID:AQK75537.1	InterPro:ATPase_AAA_CS
InterPro:ATPase_AAA_core	UniProt:B4FQJ6	EMBL:BT039384	EMBL:BT042297	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0009056	GO:GO:0016787	GO:GO:0019538	GO:GO:0030163	InterPro:P-loop_NTPase	PFAM:PF00004
ScanProsite:PS00674	PANTHER:PTHR23073	PANTHER:PTHR23073:SF60	SMART:SM00382	SUPFAM:SSF52540	TIGRFAMs:TIGR01242
UniParc:UPI000013237B	EnsemblPlantsGene:Zm00001d018309	EnsemblPlants:Zm00001d018309_P003	EnsemblPlants:Zm00001d018309_T003	:	:

Description

MSS1 homolog MSS1 homolog

Coordinates

chr5:-:218238432..218242334

Molecular Weight (calculated)

47684.9 Da

IEP (calculated)

6.062

GRAVY (calculated)

-0.406

Length

426 amino acids

Sequence
(BLAST)

001: MAPEPEDDIM NEKNPRPLDE DDIALLKTYG LGPYSTSIKK VEKEIKEMAK KINDLCGIKE SDTGLAPPSQ WDLVSDKQMM QEEQPLQVAR CTKIISPNTD
101: DAKYVINVKQ IAKFVVGLGD KVSPTDIEEG MRVGVDRNKY QIQIPLPPKI DPSVTMMTVE EKPDVTYNDV GGCKEQIEKM REVVELPMLH PEKFVKLGID
201: PPKGVLCYGP PGTGKTLLAR AVANRTDACF IRVIGSELVQ KYVGEGARMV RELFQMARSK KACIVFFDEV DAIGGARFDD GVGGDNEVQR TMLEIVNQLD
301: GFDARGNIKV LMATNRPDTL DPALLRPGRL DRKVEFGLPD LEGRTQIFKI HTRTMNCERD IRFELLARLC PNSTGADIRS VCTEAGMYAI RARRKTVTEK
401: DFLDAVNKVI KGYQKFSATP KYMVYN

Best Arabidopsis Sequence Match ( AT1G53750.1 )
(BLAST)

001: MVRDIEDEIR DEKNPRPLDE DDIALLKTYG LGPYSAPIKK VEKEIKDLAK KINDLCGIKE SDTGLAPPSQ WDLVSDKQMM QEEQPLQVAR CTKIISPNTE
101: DAKYVINVKQ IAKFVVGLGD KVSPTDIEEG MRVGVDRNKY QIQIPLPPKI DPSVTMMTVE EKPDVTYNDV GGCKEQIEKM REVVELPMLH PEKFVKLGID
201: PPKGVLCYGP PGTGKTLLAR AVANRTDACF IRVIGSELVQ KYVGEGARMV RELFQMARSK KACIVFFDEV DAIGGARFDD GVGGDNEVQR TMLEIVNQLD
301: GFDARGNIKV LMATNRPDTL DPALLRPGRL DRKVEFGLPD LESRTQIFKI HTRTMNCERD IRFELLARLC PNSTGADIRS VCTEAGMYAI RARRKTVTEK
401: DFLDAVNKVI KGYQKFSATP KYMVYN

Arabidopsis Description

RPT1ARPT1A [Source:UniProtKB/TrEMBL;Acc:A0A178W3N8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.