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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 extracellular: 20408568
plasma membrane: 23353019
mitochondrion: 27297264
plasma membrane: 27341663
msms PMID: 23353019 doi
D Hopff, S Wienkoop, S Lüthje
University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Plant Physiology, Ohnhorststraße 18, D-22609 Hamburg, Germany.
msms PMID: 27297264 doi
D Dahal, KJ Newton, BP Mooney
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID: 27341663 doi
P Voothuluru, JC Anderson, RE Sharp, SC Peck
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
msms PMID: 20408568 doi
W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li
Department of Plant Nutrition, China Agricultural University, Beijing, PR China.
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d014124_P001
Zm00001d016928_P010
Zm00001d024430_P002
Zm00001d025580_P001
Zm00001d027707_P001
Zm00001d032117_P001
Zm00001d032859_P006
Zm00001d048409_P001
Zm00001d049480_P005
Zm00001d050868_P004

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G09840.1 Zm00001d016928_P010 AT1G71830.1 15592873
AT3G09840.1 Zm00001d024430_P002 AT1G71830.1 15592873
AT3G09840.1 Zm00001d025580_P001 AT1G71830.1 15592873
AT3G09840.1 Zm00001d049480_P005 AT1G71830.1 15592873
AT3G09840.1 Zm00001d050868_P004 AT1G71830.1 15592873
AT3G09840.1 Zm00001d016928_P010 AT1G71830.1 16473966
AT3G09840.1 Zm00001d024430_P002 AT1G71830.1 16473966
AT3G09840.1 Zm00001d025580_P001 AT1G71830.1 16473966
AT3G09840.1 Zm00001d049480_P005 AT1G71830.1 16473966
AT3G09840.1 Zm00001d050868_P004 AT1G71830.1 16473966
AT3G09840.1 Zm00001d016928_P010 AT1G71830.1 16621602
AT3G09840.1 Zm00001d024430_P002 AT1G71830.1 16621602
AT3G09840.1 Zm00001d025580_P001 AT1G71830.1 16621602
AT3G09840.1 Zm00001d049480_P005 AT1G71830.1 16621602
AT3G09840.1 Zm00001d050868_P004 AT1G71830.1 16621602
AT3G09840.1 Zm00001d016928_P010 AT1G71830.1 17693538
AT3G09840.1 Zm00001d024430_P002 AT1G71830.1 17693538
AT3G09840.1 Zm00001d025580_P001 AT1G71830.1 17693538
AT3G09840.1 Zm00001d049480_P005 AT1G71830.1 17693538
AT3G09840.1 Zm00001d050868_P004 AT1G71830.1 17693538
AT3G09840.1 Zm00001d014124_P001 AT3G09840.1 15592873
AT3G09840.1 Zm00001d027707_P001 AT3G09840.1 15592873
AT3G09840.1 Zm00001d032117_P001 AT3G09840.1 15592873
AT3G09840.1 Zm00001d032859_P006 AT3G09840.1 15592873
AT3G09840.1 Zm00001d048409_P001 AT3G09840.1 15592873
AT3G09840.1 Zm00001d014124_P001 AT3G09840.1 16621602
AT3G09840.1 Zm00001d027707_P001 AT3G09840.1 16621602
AT3G09840.1 Zm00001d032117_P001 AT3G09840.1 16621602
AT3G09840.1 Zm00001d032859_P006 AT3G09840.1 16621602
AT3G09840.1 Zm00001d048409_P001 AT3G09840.1 16621602
AT3G09840.1 Zm00001d014124_P001 AT3G09840.1 17693538
AT3G09840.1 Zm00001d027707_P001 AT3G09840.1 17693538
AT3G09840.1 Zm00001d032117_P001 AT3G09840.1 17693538
AT3G09840.1 Zm00001d032859_P006 AT3G09840.1 17693538
AT3G09840.1 Zm00001d048409_P001 AT3G09840.1 17693538
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EER94171 Sorghum cytosol 99.51 99.51
Zm00001d014124_P001 Maize cytosol, plasma membrane 98.89 98.77
Zm00001d027707_P001 Maize cytosol, plasma membrane 96.67 97.03
Zm00001d048409_P001 Maize cytosol 96.05 96.77
TraesCS4D01G267800.1 Wheat cytosol 94.81 94.46
HORVU4Hr1G071960.2 Barley cytosol 95.19 94.37
TraesCS4B01G268200.1 Wheat cytosol 95.19 94.37
TraesCS4D01G267600.2 Wheat cytosol 95.19 94.25
HORVU4Hr1G072010.4 Barley cytosol 94.81 94.23
TraesCS4B01G268400.1 Wheat golgi 94.57 94.22
TraesCS4A01G035700.1 Wheat plastid 94.44 94.1
TraesCS4A01G035500.1 Wheat golgi, nucleus 94.81 93.89
KRG96011 Soybean endoplasmic reticulum, mitochondrion, nucleus 92.1 92.33
HORVU0Hr1G038060.2 Barley cytosol 60.25 92.25
KRH67721 Soybean endoplasmic reticulum, nucleus 91.98 92.2
CDY11249 Canola cytosol 90.49 91.85
AT5G03340.1 Thale cress cytosol 91.48 91.48
PGSC0003DMT400027096 Potato cytosol 91.23 91.46
Solyc06g074980.2.1 Tomato nucleus 90.86 91.43
KRH32530 Soybean endoplasmic reticulum, mitochondrion 91.73 91.39
CDX73996 Canola cytosol 91.23 91.35
Bra001297.1-P Field mustard cytosol 91.23 91.35
Solyc10g084050.1.1 Tomato cytosol, nucleus, plastid, unclear 91.11 91.34
VIT_08s0040g01480.t01 Wine grape cytosol 90.86 91.32
KRH19916 Soybean endoplasmic reticulum, mitochondrion 91.36 91.25
PGSC0003DMT400031321 Potato cytosol 90.62 91.18
TraesCS1B01G235400.1 Wheat cytosol 72.22 91.12
KRH26511 Soybean cytosol, endoplasmic reticulum, mitochondrion, nucleus 90.74 91.08
TraesCS1D01G223800.1 Wheat cytosol 89.88 91.0
CDY07941 Canola cytosol 90.86 90.98
KRH22853 Soybean cytosol, endoplasmic reticulum, mitochondrion 90.62 90.95
CDY22207 Canola cytosol 90.86 90.86
CDY54618 Canola cytosol 90.62 90.84
TraesCS1B01G192400.1 Wheat cytosol 90.62 90.84
Bra034089.1-P Field mustard cytosol 90.74 90.74
CDY41581 Canola cytosol 90.49 90.72
Solyc11g069720.1.1 Tomato cytosol, extracellular, nucleus, plastid 90.12 90.68
PGSC0003DMT400050662 Potato cytosol 90.12 90.68
HORVU1Hr1G049910.1 Barley cytosol 91.11 90.66
TraesCS1A01G222100.1 Wheat cytosol 89.51 90.62
CDY41316 Canola cytosol, extracellular 90.62 90.62
CDY13308 Canola cytosol 90.62 90.62
AT3G09840.1 Thale cress cytosol 90.49 90.61
Bra029795.1-P Field mustard cytosol 90.49 90.61
TraesCS1B01G235300.1 Wheat cytosol 89.38 90.5
Bra003123.1-P Field mustard cytosol 90.49 90.49
CDX80862 Canola cytosol, plastid 90.25 90.36
PGSC0003DMT400055513 Potato cytosol 90.0 90.33
TraesCSU01G001000.1 Wheat cytosol 89.38 90.16
TraesCS1D01G253100.1 Wheat cytosol 89.01 90.12
HORVU1Hr1G060370.1 Barley cytosol 89.75 90.09
TraesCS1B01G235500.1 Wheat cytosol 88.77 89.88
TraesCS1A01G190300.1 Wheat cytosol 89.63 89.85
AT3G53230.1 Thale cress cytosol 90.37 89.82
HORVU1Hr1G060340.2 Barley cytosol 89.75 89.42
KRG99061 Soybean cytosol 21.98 89.0
KRH30601 Soybean cytosol 88.27 88.71
Solyc09g008070.2.1 Tomato cytosol, unclear 88.4 88.61
Bra006978.1-P Field mustard cytosol 88.52 88.41
KRG94277 Soybean cytosol 22.35 87.44
CDX78154 Canola cytosol 80.12 87.23
CDX73571 Canola cytosol 80.0 87.21
KRH25081 Soybean cytosol, endoplasmic reticulum, mitochondrion 76.42 85.5
GSMUA_Achr3P00260_001 Banana cytosol 51.48 85.45
VIT_06s0061g00340.t01 Wine grape cytosol 79.26 83.92
CDX67563 Canola cytosol 88.27 81.34
Zm00001d032117_P001 Maize cytosol 27.53 69.69
Zm00001d050303_P001 Maize cytosol 65.56 67.22
Bra005733.1-P Field mustard cytosol 91.36 67.03
KRH45638 Soybean cytosol 26.17 66.04
Zm00001d025776_P002 Maize cytosol 28.02 39.96
Zm00001d009592_P001 Maize cytosol 11.73 36.26
Zm00001d045163_P001 Maize mitochondrion 7.78 35.8
Zm00001d035913_P002 Maize cytosol, mitochondrion 30.86 34.11
Zm00001d015788_P001 Maize plasma membrane 16.67 33.75
Zm00001d053649_P002 Maize cytosol, mitochondrion 16.67 33.75
Zm00001d045566_P001 Maize cytosol, mitochondrion 31.6 33.33
Zm00001d046539_P002 Maize cytosol, mitochondrion 16.3 33.17
Zm00001d018309_P003 Maize cytosol 17.28 32.86
Zm00001d027244_P001 Maize cytosol 14.69 32.51
Zm00001d022096_P002 Maize mitochondrion 30.37 32.5
Zm00001d002717_P001 Maize mitochondrion 15.93 31.62
Zm00001d052078_P003 Maize cytosol 17.41 30.85
Zm00001d053999_P001 Maize cytosol 15.06 29.68
Zm00001d053616_P002 Maize cytosol 15.31 29.38
Zm00001d050616_P002 Maize plastid 15.68 29.26
Zm00001d016439_P003 Maize cytosol, extracellular, plasma membrane 15.19 29.15
Zm00001d037481_P003 Maize cytosol, extracellular, plasma membrane 15.43 29.07
Zm00001d022573_P001 Maize cytosol, extracellular, plasma membrane 15.8 28.64
Zm00001d028801_P001 Maize cytosol, extracellular 15.68 28.48
Zm00001d007215_P001 Maize cytosol 15.93 27.8
Zm00001d018409_P007 Maize cytosol 15.19 27.46
Zm00001d049140_P006 Maize cytosol, plastid 33.83 27.26
Zm00001d002462_P010 Maize mitochondrion 27.28 20.79
Zm00001d015886_P002 Maize cytosol 12.59 18.82
Zm00001d049974_P004 Maize peroxisome 22.96 16.68
Zm00001d033491_P001 Maize cytosol, plasma membrane, plastid 4.32 13.83
Protein Annotations
Gene3D:1.10.8.60EntrezGene:100274218MapMan:19.2.4.2.1Gene3D:2.40.40.20Gene3D:3.10.330.10Gene3D:3.40.50.300
UniProt:A0A1D6KUI9InterPro:AAA+_ATPaseInterPro:AAA_ATPase_CDC48InterPro:ATPase_AAA_CSInterPro:ATPase_AAA_coreInterPro:Asp_de-COase-like_dom_sf
InterPro:CDC48_domain_2-like_sfInterPro:CDC4_N-term_subdomInterPro:Cdc48_dom2GO:GO:0000166GO:GO:0003674GO:GO:0003824
GO:GO:0005488GO:GO:0005524GO:GO:0008150GO:GO:0009987GO:GO:0016787GO:GO:0051301
ProteinID:ONM06229.1ProteinID:ONM06232.1ProteinID:ONM06233.1ProteinID:ONM06235.1InterPro:P-loop_NTPasePFAM:PF00004
PFAM:PF02359PFAM:PF02933PFAM:PF09336ScanProsite:PS00674PANTHER:PTHR23077PANTHER:PTHR23077:SF122
SMART:SM00382SMART:SM01072SMART:SM01073SUPFAM:SSF50692SUPFAM:SSF52540SUPFAM:SSF54585
TIGRFAMs:TIGR01243UniParc:UPI0001890CFDInterPro:Vps4_CEnsemblPlantsGene:Zm00001d032859EnsemblPlants:Zm00001d032859_P006EnsemblPlants:Zm00001d032859_T006
SEG:seg:::::
Description
Cell division control protein 48 homolog D
Coordinates
chr1:-:240510363..240515727
Molecular Weight (calculated)
89981.2 Da
IEP (calculated)
4.803
GRAVY (calculated)
-0.378
Length
810 amino acids
Sequence
(BLAST)
001: MASQGEPSAS ASDPKEKKDY STAILERKKS PNRLVVDEAT NDDNSVVALH PDTMERLQLF RGDTVLLKGK KRKDTVCIVL ADETCEEPKV RMNKVVRQNL
101: RVRLGDVVSV HQCQDVKYGK RVHILPIDDT VEGITGNLFD AFLKPYFLEA YRPVRKGDLF LVRGGMRSVE FKVIETDPSE YCIVAPDTEI FCDGEPIKRE
201: DEERLDEVGY DDVGGVRKQM AQIRELVELP LRHPQLFKSI GVKPPKGILL YGPPGSGKTL IARAVANETG AFFFLINGPE IMSKLAGESE SNLRKAFEEA
301: EKNAPSIIFI DEIDSIAPKR EKTNGEVERR IVSQLLTLMD GLKSRSHVIV MGATNRPNSI DPALRRFGRF DREIDIGVPD EVGRLEVLRI HTKNMKLAED
401: VNLELISKDT HGYVGADLAA LCTEAALQCI REKMDIIDLE DETIDAEILN SMAVTNDHFK TALGTSNPSA LRETVVEVPN VSWEDIGGLE NVKRELQETV
501: QYPVEHPEKF EKFGMSPSKG VLFYGPPGCG KTLLAKAIAN ECQANFISVK GPELLTMWFG ESEANVREIF DKARQSAPCV LFFDELDSIA TQRGSSVGDA
601: GGAADRVLNQ LLTEMDGMNA KKTVFIIGAT NRPDIIDPAL LRPGRLDQLI YIPLPDEQSR LQIFKACLRK SPVAKDVDLN ALAKYTQGFS GADITEICQR
701: ACKYAIRENI EKDIERERRM KDNPEAMEED EVDEIAEIKA AHFEESMKYA RRSVSDADIR KYQAFAQTLQ QSRGFGSEFR FSEQSATAGA AAADPFASAG
801: AAADDDDLYS
Best Arabidopsis Sequence Match ( AT5G03340.1 )
(BLAST)
001: MSNEPESSDS KTKKDFSTAI LERKKSPNRL VVDEAINDDN SVVSLHPTTM EKLQLFRGDT ILIKGKKRKD TVCIALADET CEEPKIRMNK VVRSNLRVRL
101: GDVISVHQCP DVKYGKRVHI LPVDDTVEGV TGNLFDAYLK PYFLEAYRPV RKGDLFLVRG GMRSVEFKVI ETDPAEYCVV APDTEIFCEG EPVKREDEER
201: LDEVGYDDVG GVRKQMAQIR ELVELPLRHP QLFKSIGVKP PKGILLYGPP GSGKTLIARA VANETGAFFF CINGPEIMSK LAGESESNLR KAFEEAEKNA
301: PSIIFIDEID SIAPKREKTN GEVERRIVSQ LLTLMDGLKS RAHVIVMGAT NRPNSIDPAL RRFGRFDREI DIGVPDEIGR LEVLRIHTKN MKLAEDVDLE
401: RISKDTHGYV GADLAALCTE AALQCIREKM DVIDLEDDSI DAEILNSMAV SNEHFHTALG NSNPSALRET VVEVPNVSWE DIGGLENVKR ELQETVQYPV
501: EHPEKFEKFG MSPSKGVLFY GPPGCGKTLL AKAIANECQA NFISVKGPEL LTMWFGESEA NVREIFDKAR QSAPCVLFFD ELDSIATQRG NSAGDAGGAA
601: DRVLNQLLTE MDGMNAKKTV FIIGATNRPD IIDSALLRPG RLDQLIYIPL PDEDSRLNIF KACLRKSPVA KDVDVTALAK YTQGFSGADI TEICQRACKY
701: AIRENIEKDI ENERRRSQNP EAMEEDMVDD EVSEIRAAHF EESMKYARRS VSDADIRKYQ AFAQTLQQSR GFGSEFRFDS TAGVGRTTGV AAADPFATSA
801: AAADDDDLYS
Arabidopsis Description
CDC48ECell division control protein 48 homolog E [Source:UniProtKB/Swiss-Prot;Acc:Q9LZF6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.