Factsheet for TraesCS4A01G035500.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus

Predictor Summary:

cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, nucleus
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308
nucleus: 26228564

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G267600.2	Wheat	cytosol	99.63	99.63
TraesCS4B01G268200.1	Wheat	cytosol	99.51	99.63
HORVU4Hr1G071960.2	Barley	cytosol	99.27	99.39
TraesCS4A01G035700.1	Wheat	plastid	97.68	98.28
EER92840	Sorghum	cytosol	94.62	95.56
Zm00001d014124_P001	Maize	cytosol, plasma membrane	94.62	95.44
EER94171	Sorghum	cytosol	94.38	95.31
Os03t0151800-02	Rice	cytosol, extracellular, nucleus, plasma membrane, plastid	94.13	95.18
Zm00001d032859_P006	Maize	plasma membrane	93.89	94.81
TraesCS1A01G222100.1	Wheat	cytosol	89.73	91.75
TraesCS1A01G190300.1	Wheat	cytosol	90.59	91.71
TraesCS3A01G144500.1	Wheat	cytosol	55.01	84.43
GSMUA_Achr3P00260_001	Banana	cytosol	50.24	84.22
TraesCS3A01G145000.1	Wheat	cytosol	71.64	84.2
TraesCS3A01G145100.1	Wheat	cytosol	81.05	84.03
TraesCS1A01G248500.1	Wheat	cytosol	58.44	80.07
TraesCS2A01G060000.1	Wheat	cytosol	66.38	62.85
TraesCS2A01G355200.1	Wheat	cytosol	28.36	40.92
TraesCS7A01G378600.1	Wheat	cytosol	16.5	33.75
TraesCS6A01G162700.2	Wheat	cytosol, golgi	16.5	33.75
TraesCS3A01G450800.1	Wheat	mitochondrion	30.44	33.38
TraesCS7A01G025800.1	Wheat	mitochondrion	31.66	32.99
TraesCS4A01G463300.1	Wheat	mitochondrion	31.66	32.99
TraesCS7A01G545700.1	Wheat	cytosol	16.01	32.91
TraesCS7A01G156800.1	Wheat	cytosol	17.11	32.86
TraesCS2A01G086400.1	Wheat	cytosol	15.65	30.84
TraesCS2A01G475900.1	Wheat	cytosol	15.65	29.98
TraesCS6A01G177600.1	Wheat	cytosol	15.16	29.67
TraesCS7A01G372600.1	Wheat	cytosol	15.16	29.31
TraesCS2A01G471400.1	Wheat	cytosol	16.26	29.17
TraesCS3A01G421900.1	Wheat	cytosol	15.4	29.03
TraesCS4A01G115000.1	Wheat	cytosol	15.53	28.22
TraesCS2A01G090000.1	Wheat	cytosol	15.28	27.84
TraesCS4A01G204700.1	Wheat	cytosol, plastid	33.13	26.94
TraesCS1A01G071300.1	Wheat	cytosol, plastid	32.76	26.67
TraesCS2A01G457600.3	Wheat	mitochondrion	26.53	23.26
TraesCS7A01G277100.1	Wheat	peroxisome	22.98	17.25
TraesCS5A01G301500.1	Wheat	mitochondrion	22.37	17.01

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.4.2.1	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:AAA_ATPase_CDC48	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf	InterPro:CDC48_domain_2-like_sf	InterPro:CDC4_N-term_subdom
InterPro:Cdc48_dom2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02359	PFAM:PF02933	PFAM:PF09336
ScanProsite:PS00674	PANTHER:PTHR23077	PANTHER:PTHR23077:SF122	SMART:SM00382	SMART:SM01072	SMART:SM01073
SUPFAM:SSF50692	SUPFAM:SSF52540	SUPFAM:SSF54585	TIGRFAMs:TIGR01243	EnsemblPlantsGene:TraesCS4A01G035500	EnsemblPlants:TraesCS4A01G035500.1
InterPro:Vps4_C	TIGR:cd00009	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4A:-:27681900..27686374

Molecular Weight (calculated)

90828.2 Da

IEP (calculated)

4.884

GRAVY (calculated)

-0.393

Length

818 amino acids

Sequence
(BLAST)

001: MATPNPPPPQ QDEPSSSADP KAKKDYSTAI LERKKSPNRL VVDEATNDDN SVVALHPDTM ERLQLFRGDT VLLKGKKRKD TICIVLADDT CDEPKIRMNK
101: TVRKNLRVRL GDVVSVHQCP DVKYGKRVHI LPIDDTVEGI TGNLFDAFLK PYFLEAYRPL RKGDLFLVRG GMRSVEFKVI ETDPAEYCIV APDTEIFCDG
201: EPVKREDEER LDDVGYDDVG GVRKQMAQIR ELVELPLRHP QLFKSIGVKP PKGILLFGPP GSGKTLIARA VANETGAFFF LINGPEIMSK LAGESESNLR
301: KAFEEAEKNA PSIIFIDEID SIAPKREKTN GEVERRIVSQ LLTLMDGLKS RAHVIVMGAT NRPNSIDPAL RRFGRFDREI DIGVPDEVGR LEVLRIHTKN
401: MKLAEDVELE HISRDTHGYV GADLAALCTE AALQCIREKM DIIDLEDETI DAEILNSMAV TNDHFKTALT TSNPSALRET VVEVPNVSWE DIGGLENVKR
501: ELQETVQYPV EHPEKFEKFG MSPSKGVLFY GPPGCGKTLL AKAIANECQA NFISIKGPEL LTMWFGESEA NVREIFDKAR GSAPCVLFFD ELDSIATQRG
601: SSVGDAGGAA DRVLNQLLTE MDGMNAKKTV FIIGATNRPD IIDPALLRPG RLDQLIYIPL PDVESRHQIF KACLRKSPLA KDIDLSALAK YTQGFSGADI
701: TEICQRACKY AIRENIEKDI ERERRRKDNP EAMEEDEVDE VAEIRAAHFE ESMKYARRSV SDADIRKYQA FAQTLQQSRG FGSEFRFPDQ PAAGAASSAA
801: ADPFASAAAA AEDDDLYS

Best Arabidopsis Sequence Match ( AT3G53230.1 )
(BLAST)

001: MANQAESSDS KGTKKDFSTA ILEKKKAANR LVVDEAINDD NSVVSLHPDT MEKLQLFRGD TILIKGKKRK DTVCIALADE TCDEPKIRMN KVVRSNLRVR
101: LGDVISVHQC PDVKYGNRVH ILPLDDTIEG VSGNIFDAYL KPYFLEAYRP VRKGDLFLVR GGMRSIEFKV IETDPAEYCV VAPDTEIFCE GEPIKREDEE
201: RLDEVGYDDV GGVRKQMAQI RELVELPLRH PQLFKSIGVK PPKGILLYGP PGSGKTLIAR AVANETGAFF FCINGPEIMS KLAGESESNL RKAFEEAEKN
301: APSIIFIDEI DSIAPKREKT HGEVERRIVS QLLTLMDGLK SRAHVIVMGA TNRPNSIDPA LRRFGRFDRE IDIGVPDEIG RLEVLRIHTK NMKLAEDVDL
401: ERVSKDTHGY VGADLAALCT EAALQCIREK MDVIDLDDEE IDAEILNSMA VSNDHFQTAL GNSNPSALRE TVVEVPNVSW EDIGGLENVK RELQETVQYP
501: VEHPEKFEKF GMSPSKGVLF YGPPGCGKTL LAKAIANECQ ANFISIKGPE LLTMWFGESE ANVREIFDKA RQSAPCVLFF DELDSIATQR GNSVGDAGGA
601: ADRVLNQLLT EMDGMNAKKT VFIIGATNRP DIIDPALLRP GRLDQLIYIP LPDEESRYQI FKSCLRKSPV AKDVDLRALA KYTQGFSGAD ITEICQRSCK
701: YAIRENIEKD IEKERKRAES PEAMEEDEEE IAEIKAGHFE ESMKYARRSV SDADIRKYQA FAQTLQQSRG FGSEFRFPDA PTGTTGAFPG AAATVGGVDP
801: FATSGGAADD DDLYS

Arabidopsis Description

CDC48DCell division control protein 48 homolog D [Source:UniProtKB/Swiss-Prot;Acc:Q9SCN8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.