Factsheet for TraesCS4D01G267600.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G268200.1	Wheat	cytosol	99.88	100.0
TraesCS4A01G035500.1	Wheat	golgi, nucleus	99.63	99.63
HORVU4Hr1G071960.2	Barley	cytosol	99.39	99.51
TraesCS4D01G267800.1	Wheat	cytosol	98.17	98.77
EER92840	Sorghum	cytosol	94.99	95.93
Zm00001d014124_P001	Maize	cytosol, plasma membrane	94.99	95.81
EER94171	Sorghum	cytosol	94.74	95.68
Zm00001d032859_P006	Maize	plasma membrane	94.25	95.19
Os03t0151800-02	Rice	cytosol, extracellular, nucleus, plasma membrane, plastid	94.13	95.18
TraesCS1D01G194500.1	Wheat	cytosol	30.56	94.34
TraesCS1D01G223800.1	Wheat	cytosol	90.22	92.25
TraesCS1D01G253100.1	Wheat	cytosol	89.49	91.5
TraesCS3D01G153300.1	Wheat	cytosol	23.47	85.71
TraesCS3D01G153800.1	Wheat	cytosol	71.15	85.59
TraesCS1D01G399100.1	Wheat	cytosol	81.17	84.16
TraesCS3D01G154000.1	Wheat	cytosol	80.93	84.01
GSMUA_Achr3P00260_001	Banana	cytosol	50.0	83.81
TraesCS1D01G340100.1	Wheat	cytosol	26.16	83.59
TraesCS1D01G248000.1	Wheat	cytosol	80.32	83.27
TraesCS3D01G153900.1	Wheat	cytosol	79.95	82.99
TraesCS6D01G360700.1	Wheat	cytosol	72.98	81.11
TraesCS2D01G353100.1	Wheat	cytosol	28.24	40.67
TraesCS6D01G149500.1	Wheat	cytosol	15.4	35.0
TraesCS5D01G081900.1	Wheat	mitochondrion	31.17	34.32
TraesCS3D01G443600.1	Wheat	mitochondrion	30.93	33.82
TraesCS7D01G375500.1	Wheat	cytosol	16.5	33.75
TraesCS7D01G532000.1	Wheat	cytosol	16.14	33.17
TraesCS7D01G157200.1	Wheat	cytosol	17.24	33.1
TraesCS6D01G326400.1	Wheat	cytosol	17.24	33.1
TraesCS7D01G023600.1	Wheat	mitochondrion	31.54	32.87
TraesCS2D01G476000.1	Wheat	cytosol	15.77	30.94
TraesCS2D01G083900.1	Wheat	golgi	15.65	30.84
TraesCS6D01G166700.1	Wheat	cytosol, golgi	15.16	29.67
TraesCS7D01G350300.1	Wheat	cytosol	15.16	29.31
TraesCS2D01G471200.1	Wheat	cytosol	16.01	28.92
TraesCS3D01G417000.1	Wheat	cytosol	15.28	28.8
TraesCS4D01G190600.1	Wheat	cytosol, golgi	15.53	28.22
TraesCS7D01G134800.1	Wheat	cytosol	14.67	27.97
TraesCS2D01G087900.1	Wheat	cytosol, golgi	15.28	27.84
TraesCS4D01G105500.2	Wheat	cytosol, plastid	33.13	26.94
TraesCS1D01G073600.1	Wheat	cytosol, plastid	32.89	26.77
TraesCS2D01G458300.3	Wheat	mitochondrion	26.77	23.47
TraesCS7D01G277100.1	Wheat	cytosol, peroxisome, plastid	23.11	17.34
TraesCS5D01G306600.2	Wheat	mitochondrion	22.86	17.09

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.4.2.1	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:AAA_ATPase_CDC48	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf	InterPro:CDC48_domain_2-like_sf	InterPro:CDC4_N-term_subdom
InterPro:Cdc48_dom2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02359	PFAM:PF02933	PFAM:PF09336
ScanProsite:PS00674	PANTHER:PTHR23077	PANTHER:PTHR23077:SF122	SMART:SM00382	SMART:SM01072	SMART:SM01073
SUPFAM:SSF50692	SUPFAM:SSF52540	SUPFAM:SSF54585	TIGRFAMs:TIGR01243	EnsemblPlantsGene:TraesCS4D01G267600	EnsemblPlants:TraesCS4D01G267600.2
InterPro:Vps4_C	TIGR:cd00009	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4D:-:438256826..438261109

Molecular Weight (calculated)

90812.2 Da

IEP (calculated)

4.885

GRAVY (calculated)

-0.391

Length

818 amino acids

Sequence
(BLAST)

001: MATPNPPPPQ QDEPSSSADP KAKKDYSTAI LERKKSPNRL VVDEATNDDN SVVALHPDTM ERLQLFRGDT VLLKGKKRKD TICIVLADDT CEEPKVRMNK
101: TVRKNLRVRL GDVVSVHQCP DVKYGKRVHI LPIDDTVEGI TGNLFDAFLK PYFLEAYRPL RKGDLFLVRG GMRSVEFKVI ETDPAEYCIV APDTEIFCDG
201: EPVKREDEER LDDVGYDDVG GVRKQMAQIR ELVELPLRHP QLFKSIGVKP PKGILLFGPP GSGKTLIARA VANETGAFFF LINGPEIMSK LAGESESNLR
301: KAFEEAEKNA PSIIFIDEID SIAPKREKTN GEVERRIVSQ LLTLMDGLKS RAHVIVMGAT NRPNSIDPAL RRFGRFDREI DIGVPDEVGR LEVLRIHTKN
401: MKLAEDVELE HISRDTHGYV GADLAALCTE AALQCIREKM DIIDLEDETI DAEILNSMAV TNDHFKTALT TSNPSALRET VVEVPNVSWE DIGGLENVKR
501: ELQETVQYPV EHPEKFEKFG MSPSKGVLFY GPPGCGKTLL AKAIANECQA NFISIKGPEL LTMWFGESEA NVREIFDKAR GSAPCVLFFD ELDSIATQRG
601: SSVGDAGGAA DRVLNQLLTE MDGMNAKKTV FIIGATNRPD IIDPALLRPG RLDQLIYIPL PDVESRHQIF KACLRKSPLA KDIDLSALAK YTQGFSGADI
701: TEICQRACKY AIRENIEKDI ERERRRKDNP EAMEEDEVDE VAEIRAAHFE ESMKYARRSV SDADIRKYQA FAQTLQQSRG FGSEFRFPDQ PAAGAASAAA
801: ADPFASAAAA AEDDDLYS

Best Arabidopsis Sequence Match ( AT3G01610.1 )
(BLAST)

001: MGRRGRGGGG GMGGGINRRY LSQVMDTCGK DLSTAEDIVD DLRSRYGNFA RLTRQVLLLN VRQVLNVRNN KRVKDEDEDD NIGDEEGSAS QRKKQRRVDE
101: KEEKLQRAEQ SHLRKRNMER SVSSSPSSSS SSEDSGDVST SEDAVYGEKL SPPRFDLIND SLRDNYAKLN SSSKKPIGSP AEKNVEVETV SNKGRSKLAT
201: MGARKEAKVS LSLSGATGNG DLEVEGTKGP TFKDFGGIKK ILDELEMNVL FPILNPEPFK KIGVKPPSGI LFHGPPGCGK TKLANAIANE AGVPFYKISA
301: TEVISGVSGA SEENIRELFS KAYRTAPSIV FIDEIDAIGS KRENQQREME KRIVTQLLTC MDGPGNKGDK NAPDSSAGFV LVIGATNRPD ALDPALRRSG
401: RFETEIALTA PDEDARAEIL SVVAQKLRLE GPFDKKRIAR LTPGFVGADL ESVAYLAGRK AIKRILDSRK SEQSGDGEDD KSWLRMPWPE EELEKLFVKM
501: SDFEEAVNLV QASLTREGFS IVPDVKWDDV GGLDHLRLQF NRYIVRPIKK PDIYKAFGVD LETGFLLYGP PGCGKTLIAK AAANEAGANF MHIKGAELLN
601: KYVGESELAI RTLFQRARTC APCVIFFDEV DALTTSRGKE GAWVVERLLN QFLVELDGGE RRNVYVIGAT NRPDVVDPAF LRPGRFGNLL YVPLPNADER
701: ASILKAIARK KPIDPSVDLD GIAKNNCEGF SGADLAHLVQ KATFQAVEEM IGSSESSEDD VTDITQCTIK TRHFEQALSL VSPSVNKQQR RHYDALSTKL
801: QESVGRNTEQ VTIGPSFTLE

Arabidopsis Description

CDC48CCell division cycle 48C [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.