Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G036400.1 | Wheat | cytosol | 96.27 | 96.72 |
| Zm00001d045163_P001 | Maize | mitochondrion | 38.46 | 93.75 |
| EER87942 | Sorghum | cytosol | 93.47 | 93.26 |
| Os02t0803700-01 | Rice | cytosol, nucleus, plastid | 93.24 | 93.24 |
| KXG31298 | Sorghum | cytosol | 93.01 | 93.22 |
| Os06t0173100-01 | Rice | cytosol, nucleus, plasma membrane | 93.01 | 93.01 |
| GSMUA_Achr9P13230_001 | Banana | cytosol | 87.18 | 92.35 |
| GSMUA_Achr5P04520_001 | Banana | cytosol | 86.71 | 91.85 |
| VIT_14s0060g02260.t01 | Wine grape | cytosol | 86.48 | 91.6 |
| VIT_05s0020g01180.t01 | Wine grape | cytosol | 89.51 | 90.78 |
| KRH33891 | Soybean | endoplasmic reticulum, nucleus | 89.28 | 90.54 |
| KRG92899 | Soybean | cytosol, nucleus | 89.04 | 90.31 |
| TraesCS3D01G417000.1 | Wheat | cytosol | 90.68 | 89.63 |
| Solyc01g099760.2.1 | Tomato | nucleus, plastid | 88.11 | 89.36 |
| PGSC0003DMT400063574 | Potato | cytosol | 88.11 | 89.36 |
| Bra001152.1-P | Field mustard | cytosol | 87.41 | 88.44 |
| CDY40714 | Canola | cytosol | 87.41 | 88.44 |
| CDY27761 | Canola | cytosol | 87.41 | 88.44 |
| AT3G05530.1 | Thale cress | cytosol | 87.41 | 88.44 |
| Bra039431.1-P | Field mustard | cytosol | 87.41 | 88.44 |
| CDX74142 | Canola | cytosol | 87.41 | 88.44 |
| CDY05176 | Canola | cytosol | 87.41 | 88.44 |
| CDY18801 | Canola | cytosol | 87.18 | 88.21 |
| CDY18782 | Canola | cytosol | 87.18 | 88.21 |
| Bra040214.1-P | Field mustard | cytosol | 87.18 | 88.21 |
| KRH68501 | Soybean | nucleus | 84.15 | 84.94 |
| KRG96790 | Soybean | mitochondrion | 62.0 | 80.12 |
| TraesCS6D01G149500.1 | Wheat | cytosol | 34.97 | 41.67 |
| TraesCS4D01G190600.1 | Wheat | cytosol, golgi | 41.49 | 39.56 |
| TraesCS7D01G375500.1 | Wheat | cytosol | 36.83 | 39.5 |
| TraesCS2D01G087900.1 | Wheat | cytosol, golgi | 41.26 | 39.42 |
| TraesCS6D01G166700.1 | Wheat | cytosol, golgi | 37.76 | 38.76 |
| TraesCS6D01G326400.1 | Wheat | cytosol | 38.46 | 38.73 |
| TraesCS7D01G157200.1 | Wheat | cytosol | 38.46 | 38.73 |
| TraesCS7D01G350300.1 | Wheat | cytosol | 37.76 | 38.3 |
| TraesCS2D01G083900.1 | Wheat | golgi | 36.83 | 38.07 |
| TraesCS2D01G476000.1 | Wheat | cytosol | 36.83 | 37.89 |
| TraesCS7D01G532000.1 | Wheat | cytosol | 34.27 | 36.93 |
| TraesCS2D01G471200.1 | Wheat | cytosol | 35.43 | 33.55 |
| TraesCS1D01G194500.1 | Wheat | cytosol | 19.58 | 31.7 |
| TraesCS1D01G340100.1 | Wheat | cytosol | 18.88 | 31.64 |
| TraesCS3D01G153300.1 | Wheat | cytosol | 16.08 | 30.8 |
| TraesCS2D01G353100.1 | Wheat | cytosol | 28.9 | 21.83 |
| TraesCS3D01G153800.1 | Wheat | cytosol | 26.57 | 16.76 |
| TraesCS3D01G154000.1 | Wheat | cytosol | 29.37 | 15.99 |
| TraesCS1D01G399100.1 | Wheat | cytosol | 28.9 | 15.72 |
| TraesCS1D01G248000.1 | Wheat | cytosol | 28.67 | 15.59 |
| TraesCS3D01G443600.1 | Wheat | mitochondrion | 26.81 | 15.37 |
| TraesCS3D01G153900.1 | Wheat | cytosol | 27.97 | 15.23 |
| TraesCS5D01G081900.1 | Wheat | mitochondrion | 26.11 | 15.07 |
| TraesCS1D01G253100.1 | Wheat | cytosol | 27.74 | 14.88 |
| TraesCS4D01G267800.1 | Wheat | cytosol | 27.97 | 14.76 |
| TraesCS1D01G223800.1 | Wheat | cytosol | 27.51 | 14.75 |
| TraesCS4D01G267600.2 | Wheat | cytosol | 27.97 | 14.67 |
| TraesCS7D01G023600.1 | Wheat | mitochondrion | 26.11 | 14.27 |
| TraesCS6D01G360700.1 | Wheat | cytosol | 23.78 | 13.86 |
| TraesCS1D01G073600.1 | Wheat | cytosol, plastid | 29.6 | 12.64 |
| TraesCS4D01G105500.2 | Wheat | cytosol, plastid | 28.9 | 12.33 |
| TraesCS2D01G458300.3 | Wheat | mitochondrion | 25.41 | 11.68 |
| TraesCS7D01G277100.1 | Wheat | cytosol, peroxisome, plastid | 22.84 | 8.99 |
| TraesCS5D01G306600.2 | Wheat | mitochondrion | 21.91 | 8.59 |
Protein Annotations
| Gene3D:1.10.8.60 | MapMan:19.2.6.2.1.5 | Gene3D:2.40.50.140 | InterPro:26S_Psome_P45-like | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase |
| InterPro:ATPase_AAA_core | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0030163 | GO:GO:0036402 |
| InterPro:P-loop_NTPase | PFAM:PF00004 | InterPro:PSMC3 | PANTHER:PTHR23073 | PANTHER:PTHR23073:SF7 | SMART:SM00382 |
| SUPFAM:SSF52540 | TIGRFAMs:TIGR01242 | EnsemblPlantsGene:TraesCS7D01G134800 | EnsemblPlants:TraesCS7D01G134800.1 | TIGR:cd00009 | SEG:seg |
Description
No Description!
Coordinates
chr7D:+:86084779..86089735
Molecular Weight (calculated)
47456.6 Da
IEP (calculated)
4.567
GRAVY (calculated)
-0.394
Length
429 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSPAPAAAA PMAVDDAEDD QMASMSVEDV GRASRLLDNE TRVLKDELQR TNLEVETFES KTKENQEKIK LNKQLPYLVG NTVEVLEMNP EDEAEEDGAN
101: IDLDSQRKGK CVVLKTSTRQ TIFLPVAGLV DPDTLKPGDL VGVNKDSYLI IDTLPSEYDS RVKAMELDEK PTEDYNDVGG LEEQIQELVE AIVLPMTHKD
201: RFQKLGIRPP KGVLLYGPPG TGKTLMARAC AAQTNATFLK LAGPQLVQMF IGDGAKLVRD AFQLAKEKAP CIIFIDEIDA IGTKRFDSEV SGDREVQRTM
301: LELLNQLDGF SSDDRIKVIA ATNHADILVP ALLRSGRLDR KIEFPHPSEE ARARILQIHS RKMSVNPDVN FEELARSTDD FNGAQLKAVC VEAGMLALRR
401: DAAEVTHEDF NEGIIQVQAK KKSSLNYYA
101: IDLDSQRKGK CVVLKTSTRQ TIFLPVAGLV DPDTLKPGDL VGVNKDSYLI IDTLPSEYDS RVKAMELDEK PTEDYNDVGG LEEQIQELVE AIVLPMTHKD
201: RFQKLGIRPP KGVLLYGPPG TGKTLMARAC AAQTNATFLK LAGPQLVQMF IGDGAKLVRD AFQLAKEKAP CIIFIDEIDA IGTKRFDSEV SGDREVQRTM
301: LELLNQLDGF SSDDRIKVIA ATNHADILVP ALLRSGRLDR KIEFPHPSEE ARARILQIHS RKMSVNPDVN FEELARSTDD FNGAQLKAVC VEAGMLALRR
401: DAAEVTHEDF NEGIIQVQAK KKSSLNYYA
001: MATPMVEDTS SFEEDQLASM STEDITRATR LLDNEIRILK EDAQRTNLEC DSYKEKIKEN QEKIKLNKQL PYLVGNIVEI LEMNPEDDAE EDGANIDLDS
101: QRKGKCVVLK TSTRQTIFLP VVGLVDPDSL KPGDLVGVNK DSYLILDTLP SEYDSRVKAM EVDEKPTEDY NDIGGLEKQI QELVEAIVLP MTHKERFEKL
201: GVRPPKGVLL YGPPGTGKTL MARACAAQTN ATFLKLAGPQ LVQMFIGDGA KLVRDAFQLA KEKAPCIIFI DEIDAIGTKR FDSEVSGDRE VQRTMLELLN
301: QLDGFSSDER IKVIAATNRA DILDPALMRS GRLDRKIEFP HPTEEARARI LQIHSRKMNV HPDVNFEELA RSTDDFNGAQ LKAVCVEAGM LALRRDATEV
401: NHEDFNEGII QVQAKKKASL NYYA
101: QRKGKCVVLK TSTRQTIFLP VVGLVDPDSL KPGDLVGVNK DSYLILDTLP SEYDSRVKAM EVDEKPTEDY NDIGGLEKQI QELVEAIVLP MTHKERFEKL
201: GVRPPKGVLL YGPPGTGKTL MARACAAQTN ATFLKLAGPQ LVQMFIGDGA KLVRDAFQLA KEKAPCIIFI DEIDAIGTKR FDSEVSGDRE VQRTMLELLN
301: QLDGFSSDER IKVIAATNRA DILDPALMRS GRLDRKIEFP HPTEEARARI LQIHSRKMNV HPDVNFEELA RSTDDFNGAQ LKAVCVEAGM LALRRDATEV
401: NHEDFNEGII QVQAKKKASL NYYA
Arabidopsis Description
RPT5A26S proteasome regulatory subunit 6A homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9SEI2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.