Factsheet for TraesCS7D01G199900.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G238900.1	Wheat	mitochondrion	97.97	98.72
TraesCS7B01G103800.2	Wheat	mitochondrion	89.59	97.51
EER88157	Sorghum	mitochondrion	89.09	88.86
Zm00001d044748_P002	Maize	mitochondrion	87.06	87.5
Os06t0246500-01	Rice	plastid	88.32	87.44
GSMUA_Achr1P18330_001	Banana	cytosol, mitochondrion	68.78	83.64
TraesCS6D01G291100.1	Wheat	mitochondrion	81.73	82.99
GSMUA_Achr7P05520_001	Banana	cytosol, mitochondrion	60.15	81.44
CDY31596	Canola	mitochondrion	13.71	80.6
KRG99219	Soybean	mitochondrion	67.51	77.33
HORVU7Hr1G040460.4	Barley	mitochondrion	98.48	77.14
Bra035416.1-P	Field mustard	mitochondrion	75.89	76.86
CDY24500	Canola	mitochondrion	75.89	76.86
CDY16236	Canola	mitochondrion	75.38	76.74
CDY33613	Canola	mitochondrion	75.63	76.61
CDY70124	Canola	cytosol	28.17	76.55
CDY38784	Canola	mitochondrion	75.89	76.28
Bra024643.1-P	Field mustard	mitochondrion	74.87	76.23
KRH45768	Soybean	mitochondrion	76.14	76.14
AT1G24180.1	Thale cress	mitochondrion	75.89	76.08
AT1G59900.1	Thale cress	mitochondrion	74.87	75.84
CDY11622	Canola	mitochondrion	75.38	75.77
KRH69435	Soybean	mitochondrion	76.14	75.76
CDY40292	Canola	mitochondrion	75.38	75.19
Bra012418.1-P	Field mustard	mitochondrion	75.38	75.0
CDY28458	Canola	mitochondrion	75.13	74.94
PGSC0003DMT400058223	Potato	mitochondrion	74.37	74.94
Solyc05g006520.2.1	Tomato	plastid	74.37	74.94
PGSC0003DMT400004851	Potato	mitochondrion	73.1	74.23
VIT_09s0018g01940.t01	Wine grape	mitochondrion, plastid	74.62	73.87
Bra016238.1-P	Field mustard	mitochondrion	74.87	73.75
Solyc04g005080.2.1	Tomato	mitochondrion, unclear	73.1	73.66
KRH74712	Soybean	mitochondrion	68.27	73.5
VIT_01s0026g00990.t01	Wine grape	mitochondrion, plastid	73.6	72.86
Bra017890.1-P	Field mustard	cytosol	14.97	65.56
CDY55062	Canola	cytosol	30.71	64.36
CDY14675	Canola	cytosol	69.8	62.5
KRG95283	Soybean	cytosol, mitochondrion, plastid	25.63	61.59
CDY55064	Canola	plasma membrane	49.49	59.45
TraesCS2D01G010700.1	Wheat	golgi	35.79	33.57
TraesCS5D01G126700.1	Wheat	mitochondrion	25.89	21.75

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	MapMan:2.2.1.1.1	Gene3D:3.40.50.970	ncoils:Coil
InterPro:DH_E1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004739	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006086	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016624	GO:GO:0043231	PFAM:PF00676	PANTHER:PTHR11516	PANTHER:PTHR11516:SF38	InterPro:Pyrv_DH_E1_asu_subgrp-y
SUPFAM:SSF52518	InterPro:THDP-binding	TIGRFAMs:TIGR03182	EnsemblPlantsGene:TraesCS7D01G199900	EnsemblPlants:TraesCS7D01G199900.1	TIGR:cd02000
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7D:+:156809538..156812925

Molecular Weight (calculated)

43425.2 Da

IEP (calculated)

8.060

GRAVY (calculated)

-0.268

Length

394 amino acids

Sequence
(BLAST)

001: MAAAILRRLS PAAAQRAPPR LLPPTLARGV SDSTEPLTVE TSVPFTSHIV DPPSRDVSTT PRELAAAFRD MALMRRAEIA ADSLYKAKLI RGFCHLYDGQ
101: EAVAVGMEAA ITRRDAIITA YRDHCLYLAR GGDLVAAFAE LMGRVDGCSR GKGGSMHFYK KDANFYGGHG IVGAQVPLGC GLAFAQRYRK EGTVTFDLYG
201: DGAANQGQLF EALNMAALWK LPVILVCENN HYGMGTAEWK ASKSPAYYKR GDYVPGLKVD GMDFLAVKQA CKFAKEHVLE NGPIILEMDT YRYHGHSMSD
301: PGSTYRTRDE IAGIRQERDP IERVRKLLLT HDLATAQELK DMEKEIRKEV DTAIAKAKES PMPDTSELFK NVYVNDCGLE SFGVDRKVVR TVLP

Best Arabidopsis Sequence Match ( AT1G24180.1 )
(BLAST)

001: MALSRLSSRS NTFLKPAITA LPSSIRRHVS TDSSPITIET AVPFTSHLCE SPSRSVETSS EEILAFFRDM ARMRRMEIAA DSLYKAKLIR GFCHLYDGQE
101: ALAVGMEAAI TKKDAIITSY RDHCTFIGRG GKLVDAFSEL MGRKTGCSHG KGGSMHFYKK DASFYGGHGI VGAQIPLGCG LAFAQKYNKD EAVTFALYGD
201: GAANQGQLFE ALNISALWDL PAILVCENNH YGMGTATWRS AKSPAYFKRG DYVPGLKVDG MDALAVKQAC KFAKEHALKN GPIILEMDTY RYHGHSMSDP
301: GSTYRTRDEI SGVRQVRDPI ERVRKLLLTH DIATEKELKD MEKEIRKEVD DAVAQAKESP IPDASELFTN MYVKDCGVES FGADRKELKV TLP

Arabidopsis Description

IAR4Pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8H1Y0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.