Factsheet for VIT_09s0018g01940.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

mitochondrion 8
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0026g00990.t01	Wine grape	mitochondrion, plastid	93.22	93.22
Zm00001d014833_P001	Maize	cytosol, golgi	19.6	86.67
GSMUA_Achr7P05520_001	Banana	cytosol, mitochondrion	62.31	85.22
GSMUA_Achr1P18330_001	Banana	cytosol, mitochondrion	69.35	85.19
CDY31596	Canola	mitochondrion	14.07	83.58
KRH69435	Soybean	mitochondrion	80.65	81.06
PGSC0003DMT400058223	Potato	mitochondrion	78.64	80.05
KRH45768	Soybean	mitochondrion	79.15	79.95
Solyc05g006520.2.1	Tomato	plastid	78.39	79.8
TraesCS6A01G311800.1	Wheat	golgi	74.37	79.78
KRH74712	Soybean	mitochondrion	73.37	79.78
KRG99219	Soybean	mitochondrion	68.84	79.65
Bra035416.1-P	Field mustard	mitochondrion	77.64	79.43
CDY24500	Canola	mitochondrion	77.64	79.43
CDY33613	Canola	mitochondrion	77.64	79.43
CDY70124	Canola	cytosol	28.89	79.31
Os02t0739600-01	Rice	mitochondrion	77.39	78.97
AT1G59900.1	Thale cress	mitochondrion	76.63	78.41
EES05555	Sorghum	mitochondrion	76.63	78.21
Zm00001d017985_P001	Maize	mitochondrion	76.63	78.21
CDY38784	Canola	mitochondrion	76.38	77.55
TraesCS6D01G291100.1	Wheat	mitochondrion	75.38	77.32
CDY16236	Canola	mitochondrion	75.13	77.26
TraesCS6B01G342000.1	Wheat	mitochondrion	75.13	77.06
PGSC0003DMT400004851	Potato	mitochondrion	75.13	77.06
CDY11622	Canola	mitochondrion	75.88	77.04
Zm00001d052289_P001	Maize	mitochondrion	75.38	76.92
Bra024643.1-P	Field mustard	mitochondrion	74.62	76.74
Solyc04g005080.2.1	Tomato	mitochondrion, unclear	75.38	76.73
AT1G24180.1	Thale cress	mitochondrion	75.63	76.59
Bra012418.1-P	Field mustard	mitochondrion	75.63	76.01
CDY28458	Canola	mitochondrion	75.38	75.95
CDY40292	Canola	mitochondrion	75.38	75.95
Bra016238.1-P	Field mustard	mitochondrion	75.63	75.25
TraesCS7A01G238900.1	Wheat	mitochondrion	73.87	75.19
TraesCS7D01G199900.1	Wheat	golgi	73.87	74.62
HORVU6Hr1G076810.1	Barley	plastid	75.63	74.5
Zm00001d044748_P002	Maize	mitochondrion	72.86	73.98
EER88157	Sorghum	mitochondrion	73.37	73.92
Os06t0246500-01	Rice	plastid	72.61	72.61
TraesCS7B01G103800.2	Wheat	mitochondrion	65.83	72.38
Bra017890.1-P	Field mustard	cytosol	15.58	68.89
Zm00001d014514_P001	Maize	cytosol, mitochondrion, plastid	23.62	68.61
CDY55062	Canola	cytosol	31.91	67.55
KRG95283	Soybean	cytosol, mitochondrion, plastid	27.39	66.46
CDY14675	Canola	cytosol	70.35	63.64
CDY55064	Canola	plasma membrane	50.75	61.59
HORVU7Hr1G040460.4	Barley	mitochondrion	73.62	58.25
VIT_15s0048g02580.t01	Wine grape	plastid	36.18	33.26
VIT_04s0044g01490.t01	Wine grape	mitochondrion	27.64	22.87
VIT_18s0001g14980.t01	Wine grape	plastid	25.38	21.44
Solyc04g025710.1.1	Tomato	cytosol	5.03	18.52
Os02t0739700-01	Rice	plastid	2.51	2.27

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	EntrezGene:100243322	wikigene:100243322	MapMan:2.2.1.1.1
Gene3D:3.40.50.970	UniProt:A5B2Z7	EMBL:AM444816	ProteinID:CAN74103	ProteinID:CAN74103.1	ProteinID:CCB49734
ProteinID:CCB49734.1	InterPro:DH_E1	EMBL:FN595513	GO:GO:0003674	GO:GO:0003824	GO:GO:0004739
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006086	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016624	GO:GO:0043231	GO:GO:0055114
EntrezGene:LOC100243322	wikigene:LOC100243322	PFAM:PF00676	PANTHER:PTHR11516	PANTHER:PTHR11516:SF38	InterPro:Pyrv_DH_E1_asu_subgrp-y
SUPFAM:SSF52518	TIGR:TC70460	InterPro:THDP-binding	TIGRFAMs:TIGR03182	UniParc:UPI0001520051	ArrayExpress:VIT_09s0018g01940
EnsemblPlantsGene:VIT_09s0018g01940	EnsemblPlants:VIT_09s0018g01940.t01	unigene:Vvi.24658	RefSeq:XP_002274285	RefSeq:XP_002274285.1	:

Description

Pyruvate dehydrogenase E1 component subunit alpha [Source:UniProtKB/TrEMBL;Acc:A5B2Z7]

Coordinates

chr9:-:19536441..19551673

Molecular Weight (calculated)

43935.6 Da

IEP (calculated)

7.538

GRAVY (calculated)

-0.294

Length

398 amino acids

Sequence
(BLAST)

001: MALSTSLRSN LIKPLTALTA LSSTHHLRSP FSSSADDTTV LTIETSVPFI GHRCEPPSRN VETTPKEVLG FFRDMALMRR MEIASDSLYK SKLIRGFCHL
101: YDGQEAVAVG MEAAITRRDC IITAYRDHCI YLGRGGTLFE CFSELMGRQS GCSKGKGGSM HFYKKENGFY GGHGIVGAQI PLGCGLAFAQ KYSKDETVTF
201: AMYGDGAANQ GQLFEALNMA ALWDLPAILV CENNHYGMGT AEWRAAKSPA YYKRGDYVPG LKVDGMDVLA VKQACRFAKE HALKNGPIIL EMDTYRYHGH
301: SMSDPGSTYR TRDEISGVRQ ERDAIERVRK LILSHELSTE AELKSIEKEI RGQVDDAIAR AKESPMPDPS ELFTNVYVKG FGIEVAGADR KEVRGVLP

Best Arabidopsis Sequence Match ( AT1G59900.1 )
(BLAST)

001: MALSRLSSRS NIITRPFSAA FSRLISTDTT PITIETSLPF TAHLCDPPSR SVESSSQELL DFFRTMALMR RMEIAADSLY KAKLIRGFCH LYDGQEAVAI
101: GMEAAITKKD AIITAYRDHC IFLGRGGSLH EVFSELMGRQ AGCSKGKGGS MHFYKKESSF YGGHGIVGAQ VPLGCGIAFA QKYNKEEAVT FALYGDGAAN
201: QGQLFEALNI SALWDLPAIL VCENNHYGMG TAEWRAAKSP SYYKRGDYVP GLKVDGMDAF AVKQACKFAK QHALEKGPII LEMDTYRYHG HSMSDPGSTY
301: RTRDEISGVR QERDPIERIK KLVLSHDLAT EKELKDMEKE IRKEVDDAIA KAKDCPMPEP SELFTNVYVK GFGTESFGPD RKEVKASLP

Arabidopsis Description

E1 ALPHAPyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P52901]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.