Factsheet for Solyc04g005080.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, mitochondrion

Predictor Summary:

mitochondrion 10

Predictors

GFP

MS/MS

Papers

unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004851	Potato	mitochondrion	97.7	98.45
Solyc05g006520.2.1	Tomato	plastid	87.72	87.72
GSMUA_Achr7P05520_001	Banana	cytosol, mitochondrion	63.94	85.91
GSMUA_Achr1P18330_001	Banana	cytosol, mitochondrion	69.82	84.26
CDY31596	Canola	mitochondrion	14.07	82.09
TraesCS6A01G311800.1	Wheat	golgi	76.47	80.59
KRH69435	Soybean	mitochondrion	81.07	80.05
KRH74712	Soybean	mitochondrion	73.4	78.42
Bra035416.1-P	Field mustard	mitochondrion	78.01	78.41
CDY33613	Canola	mitochondrion	78.01	78.41
CDY24500	Canola	mitochondrion	78.01	78.41
AT1G59900.1	Thale cress	mitochondrion	77.75	78.15
TraesCS6D01G291100.1	Wheat	mitochondrion	77.24	77.84
TraesCS6B01G342000.1	Wheat	mitochondrion	77.24	77.84
KRH45768	Soybean	mitochondrion	78.26	77.67
Os02t0739600-01	Rice	mitochondrion	77.24	77.44
CDY70124	Canola	cytosol	28.64	77.24
VIT_01s0026g00990.t01	Wine grape	mitochondrion, plastid	78.26	76.88
KRG99219	Soybean	mitochondrion	67.52	76.74
EES05555	Sorghum	mitochondrion	76.47	76.67
Zm00001d017985_P001	Maize	mitochondrion	76.21	76.41
CDY38784	Canola	mitochondrion	76.47	76.28
CDY11622	Canola	mitochondrion	76.21	76.02
VIT_09s0018g01940.t01	Wine grape	mitochondrion, plastid	76.73	75.38
Zm00001d052289_P001	Maize	mitochondrion	74.94	75.13
HORVU6Hr1G076810.1	Barley	plastid	77.24	74.75
AT1G24180.1	Thale cress	mitochondrion	74.94	74.55
CDY16236	Canola	mitochondrion	73.15	73.9
Bra016238.1-P	Field mustard	mitochondrion	75.45	73.75
Bra024643.1-P	Field mustard	mitochondrion	72.89	73.64
CDY28458	Canola	mitochondrion	73.91	73.16
TraesCS7A01G238900.1	Wheat	mitochondrion	73.15	73.15
TraesCS7D01G199900.1	Wheat	golgi	73.66	73.1
Bra012418.1-P	Field mustard	mitochondrion	73.91	72.98
CDY40292	Canola	mitochondrion	73.66	72.91
EER88157	Sorghum	mitochondrion	73.15	72.41
TraesCS7B01G103800.2	Wheat	mitochondrion	66.75	72.1
Zm00001d044748_P002	Maize	mitochondrion	71.87	71.68
Os06t0246500-01	Rice	plastid	72.12	70.85
Bra017890.1-P	Field mustard	cytosol	15.35	66.67
CDY55062	Canola	cytosol	31.46	65.43
KRG95283	Soybean	cytosol, mitochondrion, plastid	27.11	64.63
CDY14675	Canola	cytosol	69.57	61.82
CDY55064	Canola	plasma membrane	51.66	61.59
HORVU7Hr1G040460.4	Barley	mitochondrion	73.66	57.26
Solyc07g042920.1.1	Tomato	cytosol, mitochondrion, plastid	23.27	31.93
Solyc12g009400.1.1	Tomato	plastid	35.55	31.59
Solyc12g009410.1.1	Tomato	plastid	35.55	31.59
Solyc12g055880.1.1	Tomato	cytosol	9.72	28.15
Solyc06g059850.1.1	Tomato	cytosol	24.81	25.53
Solyc05g056480.2.1	Tomato	plastid	27.62	23.13
Solyc04g063350.2.1	Tomato	mitochondrion	26.09	21.61
Solyc04g025710.1.1	Tomato	cytosol	5.88	21.3
Solyc06g059840.2.1	Tomato	mitochondrion	24.04	20.61
Solyc12g055890.1.1	Tomato	mitochondrion	14.83	19.53
Os02t0739700-01	Rice	plastid	2.05	1.81

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	MapMan:2.2.1.1.1	Gene3D:3.40.50.970	InterPro:DH_E1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004739	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006086	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491
GO:GO:0016624	GO:GO:0043231	GO:GO:0055114	UniProt:K4BNB4	PFAM:PF00676	PANTHER:PTHR11516
PANTHER:PTHR11516:SF38	InterPro:Pyrv_DH_E1_asu_subgrp-y	SUPFAM:SSF52518	EnsemblPlantsGene:Solyc04g005080.2	EnsemblPlants:Solyc04g005080.2.1	InterPro:THDP-binding
TIGRFAMs:TIGR03182	UniParc:UPI0002765FCD	:	:	:	:

Description

Pyruvate dehydrogenase E1 component subunit alpha [Source:UniProtKB/TrEMBL;Acc:K4BNB4]

Coordinates

chr4:-:64905..71276

Molecular Weight (calculated)

43093.7 Da

IEP (calculated)

7.618

GRAVY (calculated)

-0.296

Length

391 amino acids

Sequence
(BLAST)

001: MALSTIRTVN HLLKPFTAAI SATRRLSSDS NATISVEISK PYTAHNIDPP SSIVETTPNE LMTFFADMVE MRRMEIAADS LYKAKLIRGF CHLYDGQEAV
101: AIGMEAAITK KDCIITAYRD HCIFLARGGG LVESFAELMG RKDGCSKGKG GSMHFYKKDS GFYGGHGIVG AQVPLGIGIS FAQKYNKEDH VTFAMYGDGA
201: ANQGQLFEAL NMAALWDLPA ILVCENNHYG MGTAEWRAAK SPAYYKRGDY VPGLKVDGMD ALAVKQACKF AKDHVLKKGP IILEMDTYRY HGHSMSDPGS
301: TYRTRDEISG VRGERDPVER IRNLILDHNI ATEQELKDIE KGKRKVVDEA IAKAKESPMP DPSDLFTNVY VKGFGVEVFG ADRKELRATL P

Best Arabidopsis Sequence Match ( AT1G59900.1 )
(BLAST)

001: MALSRLSSRS NIITRPFSAA FSRLISTDTT PITIETSLPF TAHLCDPPSR SVESSSQELL DFFRTMALMR RMEIAADSLY KAKLIRGFCH LYDGQEAVAI
101: GMEAAITKKD AIITAYRDHC IFLGRGGSLH EVFSELMGRQ AGCSKGKGGS MHFYKKESSF YGGHGIVGAQ VPLGCGIAFA QKYNKEEAVT FALYGDGAAN
201: QGQLFEALNI SALWDLPAIL VCENNHYGMG TAEWRAAKSP SYYKRGDYVP GLKVDGMDAF AVKQACKFAK QHALEKGPII LEMDTYRYHG HSMSDPGSTY
301: RTRDEISGVR QERDPIERIK KLVLSHDLAT EKELKDMEKE IRKEVDDAIA KAKDCPMPEP SELFTNVYVK GFGTESFGPD RKEVKASLP

Arabidopsis Description

E1 ALPHAPyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P52901]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.