Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 4
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc03g097680.2.1 | |
| Solyc06g072580.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G01090.1 | Solyc03g097680.2.1 | AT5G50850.1 | 21798944 |
| AT1G01090.1 | Solyc06g072580.2.1 | AT5G50850.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37427 | Canola | cytosol, mitochondrion, plastid | 40.35 | 74.68 |
| PGSC0003DMT400035288 | Potato | plastid | 82.81 | 54.0 |
| Solyc12g009400.1.1 | Tomato | plastid | 76.84 | 49.77 |
| Solyc12g009410.1.1 | Tomato | plastid | 76.84 | 49.77 |
| VIT_15s0048g02580.t01 | Wine grape | plastid | 75.09 | 49.42 |
| CDY37473 | Canola | plastid | 73.33 | 49.41 |
| KRH47800 | Soybean | plastid | 74.74 | 49.31 |
| KRH06359 | Soybean | nucleus | 74.39 | 49.07 |
| Bra033286.1-P | Field mustard | plastid | 73.33 | 49.06 |
| CDX90009 | Canola | plastid | 73.33 | 49.06 |
| KRH68960 | Soybean | plastid | 71.93 | 49.04 |
| Bra032619.1-P | Field mustard | plastid | 72.98 | 48.94 |
| CDY32445 | Canola | plastid | 72.98 | 48.94 |
| KRG97240 | Soybean | plastid | 72.63 | 48.48 |
| CDY15202 | Canola | plastid | 72.63 | 48.25 |
| AT1G01090.1 | Thale cress | plastid | 72.28 | 48.13 |
| TraesCS2D01G010700.1 | Wheat | golgi | 69.47 | 47.14 |
| TraesCS2A01G010100.1 | Wheat | plastid | 69.47 | 47.03 |
| TraesCS2B01G012500.1 | Wheat | plastid | 69.47 | 47.03 |
| Os04t0119400-01 | Rice | plastid | 69.82 | 46.82 |
| Zm00001d004473_P001 | Maize | plastid | 69.47 | 46.26 |
| GSMUA_Achr11P... | Banana | plastid | 69.12 | 45.81 |
| HORVU2Hr1G086290.1 | Barley | extracellular, vacuole | 16.49 | 45.63 |
| EES10385 | Sorghum | plastid | 68.77 | 45.48 |
| HORVU2Hr1G001600.1 | Barley | plastid | 67.72 | 42.23 |
| CDY37428 | Canola | cytosol | 20.0 | 38.78 |
| Solyc05g006520.2.1 | Tomato | plastid | 32.63 | 23.79 |
| Solyc04g005080.2.1 | Tomato | mitochondrion, unclear | 31.93 | 23.27 |
| GSMUA_Achr5P18750_001 | Banana | plastid | 68.77 | 21.73 |
| Solyc06g059850.1.1 | Tomato | cytosol | 21.75 | 16.32 |
| Solyc04g063350.2.1 | Tomato | mitochondrion | 24.91 | 15.04 |
| Solyc04g025710.1.1 | Tomato | cytosol | 5.61 | 14.81 |
| Solyc12g055890.1.1 | Tomato | mitochondrion | 15.44 | 14.81 |
| Solyc05g056480.2.1 | Tomato | plastid | 23.86 | 14.56 |
| Solyc06g059840.2.1 | Tomato | mitochondrion | 21.75 | 13.6 |
| Solyc12g055880.1.1 | Tomato | cytosol | 5.96 | 12.59 |
Protein Annotations
| EnsemblPlants:Solyc07g042920.1.1 | EnsemblPlantsGene:Solyc07g042920.1 | Gene3D:3.40.50.970 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016624 | GO:GO:0055114 | InterPro:DH_E1 | InterPro:THDP-binding | PANTHER:PTHR11516 |
| PANTHER:PTHR11516:SF25 | PFAM:PF00676 | SUPFAM:SSF52518 | UniParc:UPI000276C1E7 | UniProt:K4CEF2 | MapMan:35.1 |
Description
No Description!
Coordinates
chr7:+:56481058..56483528
Molecular Weight (calculated)
32051.8 Da
IEP (calculated)
5.212
GRAVY (calculated)
-0.021
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTSFSATKV LQPLPLYSTT SAENPLLMIT KEEELVLYED IVLGRAFEDM CAQMYYRGKM FGFVHLYNGQ EVVSTGLITL LKKDDSVVST YLHHVHALSK
101: GVPARQVMSE LFGKTMEHNV LGGFAFIGEG IQVATCVAFT RKYKMEVLKE DDCDHVTLSF FGDGTCNNGQ FYECLNMAAL WKLPIIFVDE NNLWKKGPAF
201: GMPEVHVDGM DVLKVREVAM EVVSRATKKN HYATKDPITI LKKYIFENNL VNEAELKAID KKIDESVEES VEFAVQAPFQ LVTSC
101: GVPARQVMSE LFGKTMEHNV LGGFAFIGEG IQVATCVAFT RKYKMEVLKE DDCDHVTLSF FGDGTCNNGQ FYECLNMAAL WKLPIIFVDE NNLWKKGPAF
201: GMPEVHVDGM DVLKVREVAM EVVSRATKKN HYATKDPITI LKKYIFENNL VNEAELKAID KKIDESVEES VEFAVQAPFQ LVTSC
001: MATAFAPTKL TATVPLHGSH ENRLLLPIRL APPSSFLGST RSLSLRRLNH SNATRRSPVV SVQEVVKEKQ STNNTSLLIT KEEGLELYED MILGRSFEDM
101: CAQMYYRGKM FGFVHLYNGQ EAVSTGFIKL LTKSDSVVST YRDHVHALSK GVSARAVMSE LFGKVTGCCR GQGGSMHMFS KEHNMLGGFA FIGEGIPVAT
201: GAAFSSKYRR EVLKQDCDDV TVAFFGDGTC NNGQFFECLN MAALYKLPII FVVENNLWAI GMSHLRATSD PEIWKKGPAF GMPGVHVDGM DVLKVREVAK
301: EAVTRARRGE GPTLVECETY RFRGHSLADP DELRDAAEKA KYAARDPIAA LKKYLIENKL AKEAELKSIE KKIDELVEEA VEFADASPQP GRSQLLENVF
401: ADPKGFGIGP DGRYRCEDPK FTEGTAQV
101: CAQMYYRGKM FGFVHLYNGQ EAVSTGFIKL LTKSDSVVST YRDHVHALSK GVSARAVMSE LFGKVTGCCR GQGGSMHMFS KEHNMLGGFA FIGEGIPVAT
201: GAAFSSKYRR EVLKQDCDDV TVAFFGDGTC NNGQFFECLN MAALYKLPII FVVENNLWAI GMSHLRATSD PEIWKKGPAF GMPGVHVDGM DVLKVREVAK
301: EAVTRARRGE GPTLVECETY RFRGHSLADP DELRDAAEKA KYAARDPIAA LKKYLIENKL AKEAELKSIE KKIDELVEEA VEFADASPQP GRSQLLENVF
401: ADPKGFGIGP DGRYRCEDPK FTEGTAQV
Arabidopsis Description
PDH-E1 ALPHAPyruvate dehydrogenase E1 component subunit alpha [Source:UniProtKB/TrEMBL;Acc:A0A178W8A7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.