Factsheet for Solyc06g072580.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 10
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
unclear: 26455813
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g005080.2.1
Solyc04g025710.1.1
Solyc05g006520.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50850.1	Solyc04g005080.2.1	AT1G59900.1	21798944
AT5G50850.1	Solyc04g025710.1.1	AT1G59900.1	21798944
AT5G50850.1	Solyc05g006520.2.1	AT1G59900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069263	Potato	mitochondrion	92.64	88.54
Solyc03g097680.2.1	Tomato	plastid	86.65	86.18
KRH73802	Soybean	mitochondrion	83.38	85.0
KRH14338	Soybean	mitochondrion	83.11	84.72
KRH16935	Soybean	mitochondrion	82.56	84.17
CDY05827	Canola	mitochondrion	82.56	83.24
AT5G50850.1	Thale cress	mitochondrion	82.29	83.2
CDX84881	Canola	mitochondrion	83.11	83.11
CDX91560	Canola	mitochondrion	82.83	83.06
CDY16348	Canola	mitochondrion	82.83	83.06
TraesCS7D01G263900.2	Wheat	mitochondrion	82.83	83.06
CDX71636	Canola	mitochondrion	82.02	82.69
TraesCS7B01G161100.1	Wheat	mitochondrion	82.83	82.38
Bra026451.1-P	Field mustard	mitochondrion	77.38	82.32
CDY45814	Canola	mitochondrion	82.29	82.29
HORVU7Hr1G055090.3	Barley	mitochondrion	82.83	82.16
TraesCS7A01G263300.1	Wheat	plastid	82.56	82.11
Bra022529.1-P	Field mustard	mitochondrion	81.74	81.97
Bra022757.1-P	Field mustard	mitochondrion	81.74	81.74
TraesCS5D01G299000.1	Wheat	mitochondrion	83.38	81.38
TraesCS5B01G290600.1	Wheat	mitochondrion	83.38	81.38
TraesCS5A01G291500.1	Wheat	golgi	83.38	81.38
VIT_17s0000g00690.t01	Wine grape	mitochondrion	79.02	81.01
Os08t0536000-01	Rice	mitochondrion	82.29	80.75
Zm00001d006107_P001	Maize	mitochondrion	82.29	80.75
EER97019	Sorghum	mitochondrion	82.29	80.53
KXG25507	Sorghum	mitochondrion	82.02	80.48
Os09t0509200-01	Rice	mitochondrion	81.47	79.52
Solyc05g024160.2.1	Tomato	mitochondrion	77.38	76.55
GSMUA_Achr8P09180_001	Banana	extracellular, mitochondrion, peroxisome	44.69	75.58
Zm00001d031659_P001	Maize	mitochondrion	81.74	75.57
Zm00001d021070_P002	Maize	mitochondrion	80.65	72.02
GSMUA_Achr5P25000_001	Banana	mitochondrion, plastid	80.65	71.5
HORVU5Hr1G077200.2	Barley	mitochondrion, plastid	83.11	70.77
Bra035715.1-P	Field mustard	mitochondrion	80.65	65.34
Solyc04g008590.2.1	Tomato	plastid	38.96	35.05
Solyc08g016750.2.1	Tomato	plastid	38.69	34.8
Solyc01g028900.2.1	Tomato	plastid	30.79	31.56

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	MapMan:2.2.1.1.2	Gene3D:3.40.50.920	Gene3D:3.40.50.970
GO:GO:0003674	GO:GO:0003824	GO:GO:0004739	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	GO:GO:0005975	GO:GO:0006086	GO:GO:0006091
GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0055114	InterPro:IPR009014	UniProt:K4C8X8	InterPro:PDHB
PFAM:PF02779	PFAM:PF02780	PANTHER:PTHR11624	PANTHER:PTHR11624:SF94	SMART:SM00861	SUPFAM:SSF52518
SUPFAM:SSF52922	EnsemblPlantsGene:Solyc06g072580.2	EnsemblPlants:Solyc06g072580.2.1	InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd
InterPro:Transketolase_C	UniParc:UPI00027659A4	:	:	:	:

Description

Pyruvate dehydrogenase E1 component subunit beta [Source:UniProtKB/TrEMBL;Acc:K4C8X8]

Coordinates

chr6:-:44760808..44768305

Molecular Weight (calculated)

39599.6 Da

IEP (calculated)

6.534

GRAVY (calculated)

-0.004

Length

367 amino acids

Sequence
(BLAST)

001: MSGIIGRTMA NRRISDLNKF LVGSRLFASR TYSSAVKEMT VRDALNSALD EEMSADPKVF VMGEEVGEYQ GAYKITKGLL AKYGPQRVID TPITEAGFTG
101: IGVGAAYHGL RPVIEFMTFN FSMQAIDHII NSAAKSNYMS AGQISVPIVF RGPNGAAAGV GAQHSQCYAA WYGACPGLKV LAPYSSEDAR GLLKAAIRDP
201: DPVVFLENEL LYGESFPISA EALDSSFSLP IGKAKIEREG KDVTITAFSK MVGYAIKAAE LLAKEGISAE VINLRSIRPL DRPAINASVR KTNRLVTVEE
301: GFPQHGVGAE ICASVVEESF EYLDAPVERI SGADVPMPYA ANLERLAVPQ VEDIVRAVKR VCYRSSK

Best Arabidopsis Sequence Match ( AT5G50850.1 )
(BLAST)

001: MLGILRQRAI DGASTLRRTR FALVSARSYA AGAKEMTVRD ALNSAIDEEM SADPKVFVMG EEVGQYQGAY KITKGLLEKY GPERVYDTPI TEAGFTGIGV
101: GAAYAGLKPV VEFMTFNFSM QAIDHIINSA AKSNYMSAGQ INVPIVFRGP NGAAAGVGAQ HSQCYAAWYA SVPGLKVLAP YSAEDARGLL KAAIRDPDPV
201: VFLENELLYG ESFPISEEAL DSSFCLPIGK AKIEREGKDV TIVTFSKMVG FALKAAEKLA EEGISAEVIN LRSIRPLDRA TINASVRKTS RLVTVEEGFP
301: QHGVCAEICA SVVEESFSYL DAPVERIAGA DVPMPYAANL ERLALPQIED IVRASKRACY RSK

Arabidopsis Description

PDH2Pyruvate dehydrogenase E1 component subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A178UM82]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.