Factsheet for TraesCS7A01G263300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G311800.1
TraesCS6B01G342000.1
TraesCS6D01G291100.1
TraesCS7A01G238900.1
TraesCS7B01G103800.2
TraesCS7D01G199900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50850.1	TraesCS6A01G311800.1	AT1G59900.1	21798944
AT5G50850.1	TraesCS6B01G342000.1	AT1G59900.1	21798944
AT5G50850.1	TraesCS6D01G291100.1	AT1G59900.1	21798944
AT5G50850.1	TraesCS7A01G238900.1	AT1G59900.1	21798944
AT5G50850.1	TraesCS7B01G103800.2	AT1G59900.1	21798944
AT5G50850.1	TraesCS7D01G199900.1	AT1G59900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G161100.1	Wheat	mitochondrion	99.73	99.73
HORVU7Hr1G055090.3	Barley	mitochondrion	99.46	99.19
TraesCS7D01G263900.2	Wheat	mitochondrion	97.56	98.36
Os08t0536000-01	Rice	mitochondrion	92.68	91.44
TraesCS5A01G291500.1	Wheat	golgi	89.43	87.77
KXG25507	Sorghum	mitochondrion	88.89	87.7
KRH16935	Soybean	mitochondrion	83.74	85.83
KRH73802	Soybean	mitochondrion	83.2	85.28
KRH14338	Soybean	mitochondrion	82.38	84.44
CDX84881	Canola	mitochondrion	83.47	83.92
CDY45814	Canola	mitochondrion	83.47	83.92
Bra026451.1-P	Field mustard	mitochondrion	78.32	83.77
AT5G50850.1	Thale cress	mitochondrion	82.38	83.75
CDY16348	Canola	mitochondrion	82.93	83.61
CDX91560	Canola	mitochondrion	82.93	83.61
VIT_01s0146g00310.t01	Wine grape	mitochondrion	82.93	83.38
CDX71636	Canola	mitochondrion	82.11	83.24
Bra022757.1-P	Field mustard	mitochondrion	82.66	83.11
CDY05827	Canola	mitochondrion	81.84	82.97
Solyc06g072580.2.1	Tomato	nucleus	82.11	82.56
Bra022529.1-P	Field mustard	mitochondrion	81.84	82.51
VIT_17s0000g00690.t01	Wine grape	mitochondrion	79.67	82.12
Zm00001d031659_P001	Maize	mitochondrion	88.35	82.12
PGSC0003DMT400011072	Potato	mitochondrion	82.11	82.11
Solyc03g097680.2.1	Tomato	plastid	81.3	81.3
GSMUA_Achr8P09180_001	Banana	extracellular, mitochondrion, peroxisome	46.34	78.8
PGSC0003DMT400069263	Potato	mitochondrion	81.57	78.39
GSMUA_Achr5P25000_001	Banana	mitochondrion, plastid	85.91	76.57
Bra035715.1-P	Field mustard	mitochondrion	79.95	65.12
TraesCS5A01G374500.1	Wheat	plastid	39.3	36.9
TraesCS5A01G030800.1	Wheat	plastid	37.4	35.29
TraesCS6A01G036000.1	Wheat	mitochondrion	31.71	31.62

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	MapMan:2.2.1.1.2	Gene3D:3.40.50.920	Gene3D:3.40.50.970
GO:GO:0003674	GO:GO:0003824	GO:GO:0004739	GO:GO:0006086	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR009014	InterPro:PDHB	PFAM:PF02779	PFAM:PF02780
PANTHER:PTHR11624	PANTHER:PTHR11624:SF94	SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding
EnsemblPlantsGene:TraesCS7A01G263300	EnsemblPlants:TraesCS7A01G263300.1	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C	TIGR:cd07036

Description

No Description!

Coordinates

chr7A:+:260892842..260901249

Molecular Weight (calculated)

39524.4 Da

IEP (calculated)

5.138

GRAVY (calculated)

0.007

Length

369 amino acids

Sequence
(BLAST)

001: MLGAARRSGC VLGQLMQTLR PAATAARSYS ATPKEMTVRE ALNSALDEEM SADPSVFLMG EEVGEYQGAY KITKGLLDKY GPDRVLDTPI TEAGFTGIGV
101: GAAYQGLRPV VEFMTFNFSM QAIDHIINSA AKSNYMSAGQ ISVPIVFRGP NGAAAGVGAQ HSQCYAAWYA HVPGLKVLTP YSAEDARGLL KAAIRDPDPV
201: VFLENELLYG ESFPIKAEVL DSSFSVPIGK AKIEREGKDV TITAFSKMVG YALQAAEILS KEGISAEVIN LRSIRPLDRA AINASVRKTS RLVTVEEGFP
301: QHGVGAEICM SVVEDSFEYL DAPVERIAGA DVPMPYAANL ERLAVPQVED IVRAAKRACY RSSSMAANA

Best Arabidopsis Sequence Match ( AT5G50850.1 )
(BLAST)

001: MLGILRQRAI DGASTLRRTR FALVSARSYA AGAKEMTVRD ALNSAIDEEM SADPKVFVMG EEVGQYQGAY KITKGLLEKY GPERVYDTPI TEAGFTGIGV
101: GAAYAGLKPV VEFMTFNFSM QAIDHIINSA AKSNYMSAGQ INVPIVFRGP NGAAAGVGAQ HSQCYAAWYA SVPGLKVLAP YSAEDARGLL KAAIRDPDPV
201: VFLENELLYG ESFPISEEAL DSSFCLPIGK AKIEREGKDV TIVTFSKMVG FALKAAEKLA EEGISAEVIN LRSIRPLDRA TINASVRKTS RLVTVEEGFP
301: QHGVCAEICA SVVEESFSYL DAPVERIAGA DVPMPYAANL ERLALPQIED IVRASKRACY RSK

Arabidopsis Description

PDH2Pyruvate dehydrogenase E1 component subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A178UM82]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.