Factsheet for VIT_01s0146g00310.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 9

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g00990.t01
VIT_09s0018g01940.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50850.1	VIT_01s0026g00990.t01	AT1G59900.1	21798944
AT5G50850.1	VIT_09s0018g01940.t01	AT1G59900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73802	Soybean	mitochondrion	86.65	88.33
KRH16935	Soybean	mitochondrion	86.1	87.78
KRH14338	Soybean	mitochondrion	85.83	87.5
Os08t0536000-01	Rice	mitochondrion	85.01	83.42
HORVU7Hr1G055090.3	Barley	mitochondrion	83.92	83.24
TraesCS7B01G161100.1	Wheat	mitochondrion	83.65	83.2
TraesCS7D01G263900.2	Wheat	mitochondrion	82.83	83.06
TraesCS7A01G263300.1	Wheat	plastid	83.38	82.93
Os09t0509200-01	Rice	mitochondrion	84.74	82.71
Zm00001d006107_P001	Maize	mitochondrion	84.2	82.62
AT5G50850.1	Thale cress	mitochondrion	81.47	82.37
EER97019	Sorghum	mitochondrion	83.92	82.13
CDX84881	Canola	mitochondrion	82.02	82.02
CDY16348	Canola	mitochondrion	81.74	81.97
CDX91560	Canola	mitochondrion	81.74	81.97
CDY05827	Canola	mitochondrion	81.2	81.87
CDX71636	Canola	mitochondrion	81.2	81.87
KXG25507	Sorghum	mitochondrion	83.38	81.82
TraesCS5A01G291500.1	Wheat	golgi	83.65	81.65
TraesCS5D01G299000.1	Wheat	mitochondrion	83.38	81.38
TraesCS5B01G290600.1	Wheat	mitochondrion	83.38	81.38
CDY45814	Canola	mitochondrion	81.2	81.2
Bra022529.1-P	Field mustard	mitochondrion	80.65	80.87
Bra026451.1-P	Field mustard	mitochondrion	76.02	80.87
VIT_17s0000g00690.t01	Wine grape	mitochondrion	78.75	80.73
Bra022757.1-P	Field mustard	mitochondrion	80.65	80.65
Zm00001d031659_P001	Maize	mitochondrion	83.65	77.33
GSMUA_Achr8P09180_001	Banana	extracellular, mitochondrion, peroxisome	45.5	76.96
GSMUA_Achr5P25000_001	Banana	mitochondrion, plastid	85.29	75.6
Zm00001d021070_P002	Maize	mitochondrion	84.2	75.18
HORVU5Hr1G077200.2	Barley	mitochondrion, plastid	82.83	70.53
Bra035715.1-P	Field mustard	mitochondrion	79.02	64.02
VIT_04s0008g02300.t01	Wine grape	mitochondrion	20.71	57.58
VIT_10s0003g03770.t01	Wine grape	plastid	38.42	36.06
VIT_04s0043g00720.t01	Wine grape	plastid	37.33	33.83
VIT_06s0004g00190.t01	Wine grape	mitochondrion	28.88	29.61

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	EntrezGene:100264409	wikigene:100264409	MapMan:2.2.1.1.2
Gene3D:3.40.50.920	Gene3D:3.40.50.970	ProteinID:CCB60857	ProteinID:CCB60857.1	UniProt:F6I1P0	EMBL:FN596513
GO:GO:0003674	GO:GO:0003824	GO:GO:0004739	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	GO:GO:0005975	GO:GO:0006086	GO:GO:0006091
GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0055114	InterPro:IPR009014	EntrezGene:LOC100264409	wikigene:LOC100264409
InterPro:PDHB	PFAM:PF02779	PFAM:PF02780	PANTHER:PTHR11624	PANTHER:PTHR11624:SF94	SMART:SM00861
SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C
UniParc:UPI0001982A34	ArrayExpress:VIT_01s0146g00310	EnsemblPlantsGene:VIT_01s0146g00310	EnsemblPlants:VIT_01s0146g00310.t01	RefSeq:XP_002264210	RefSeq:XP_002264210.1
RefSeq:XP_003631360	RefSeq:XP_003631360.1	RefSeq:XP_010657031.1	RefSeq:XP_010657033.1	RefSeq:XP_010657038.1	:

Description

Pyruvate dehydrogenase E1 component subunit beta [Source:UniProtKB/TrEMBL;Acc:F6I1P0]

Coordinates

chr1:+:22123346..22131648

Molecular Weight (calculated)

39491.6 Da

IEP (calculated)

5.299

GRAVY (calculated)

0.042

Length

367 amino acids

Sequence
(BLAST)

001: MLGIVSRKVL GQSLGRIRPA VWALRNYSSA EKQMTVRDAL NSALDEEMSA DPKVFLMGEE VGEYQGAYKI SKGLLEKYGP ERVLDTPITE AGFTGIGVGA
101: AYYGLKPVVE FMTFNFSMQA IDHIINSAAK SNYMSAGQIS VPIVFRGPNG AAAGVGAQHS QCYAAWYGSC PGLKVLSPYS SEDARGLLKA AIRDPDPVIF
201: LENELLYGES FPISAEVLDS SFCLPIGKAK IEREGRDVTI TAFSKMVGFA LKAADILAKD GISAEIINLR SIRPLDTPTI NASVRKTNRL VTVEEGFPQH
301: GVGAEICMAV VEESFGYLDA PVERIAGADV PMPYAANLER MAVPQIEDIV RAAKRACYRS TAMAATA

Best Arabidopsis Sequence Match ( AT5G50850.1 )
(BLAST)

001: MLGILRQRAI DGASTLRRTR FALVSARSYA AGAKEMTVRD ALNSAIDEEM SADPKVFVMG EEVGQYQGAY KITKGLLEKY GPERVYDTPI TEAGFTGIGV
101: GAAYAGLKPV VEFMTFNFSM QAIDHIINSA AKSNYMSAGQ INVPIVFRGP NGAAAGVGAQ HSQCYAAWYA SVPGLKVLAP YSAEDARGLL KAAIRDPDPV
201: VFLENELLYG ESFPISEEAL DSSFCLPIGK AKIEREGKDV TIVTFSKMVG FALKAAEKLA EEGISAEVIN LRSIRPLDRA TINASVRKTS RLVTVEEGFP
301: QHGVCAEICA SVVEESFSYL DAPVERIAGA DVPMPYAANL ERLALPQIED IVRASKRACY RSK

Arabidopsis Description

PDH2Pyruvate dehydrogenase E1 component subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A178UM82]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.