CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88157
EES05555

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50850.1	EER88157	AT1G59900.1	21798944
AT5G50850.1	EES05555	AT1G59900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006107_P001	Maize	mitochondrion	97.87	98.13
TraesCS5A01G291500.1	Wheat	golgi	93.07	92.82
TraesCS5B01G290600.1	Wheat	mitochondrion	92.8	92.55
TraesCS5D01G299000.1	Wheat	mitochondrion	92.53	92.29
KXG25507	Sorghum	mitochondrion	91.2	91.44
Os09t0509200-01	Rice	mitochondrion	91.2	90.96
KRH16935	Soybean	mitochondrion	84.27	87.78
KRH73802	Soybean	mitochondrion	83.47	86.94
KRH14338	Soybean	mitochondrion	82.67	86.11
VIT_17s0000g00690.t01	Wine grape	mitochondrion	80.53	84.36
VIT_01s0146g00310.t01	Wine grape	mitochondrion	82.13	83.92
AT5G50850.1	Thale cress	mitochondrion	80.53	83.2
Zm00001d021070_P002	Maize	mitochondrion	90.93	82.97
PGSC0003DMT400011072	Potato	mitochondrion	81.6	82.93
CDX71636	Canola	mitochondrion	80.27	82.69
Solyc03g097680.2.1	Tomato	plastid	81.33	82.66
CDY16348	Canola	mitochondrion	80.53	82.51
CDY45814	Canola	mitochondrion	80.53	82.29
CDX84881	Canola	mitochondrion	80.53	82.29
Solyc06g072580.2.1	Tomato	nucleus	80.53	82.29
CDX91560	Canola	mitochondrion	80.27	82.24
Bra026451.1-P	Field mustard	mitochondrion	75.47	82.03
CDY05827	Canola	mitochondrion	79.2	81.59
Bra022757.1-P	Field mustard	mitochondrion	79.73	81.47
Bra022529.1-P	Field mustard	mitochondrion	79.47	81.42
GSMUA_Achr8P09180_001	Banana	extracellular, mitochondrion, peroxisome	45.07	77.88
PGSC0003DMT400069263	Potato	mitochondrion	79.73	77.86
GSMUA_Achr5P25000_001	Banana	mitochondrion, plastid	85.87	77.78
HORVU5Hr1G077200.2	Barley	mitochondrion, plastid	88.8	77.26
Bra035715.1-P	Field mustard	mitochondrion	77.07	63.8
EER93752	Sorghum	plastid	38.13	36.95
EES16391	Sorghum	plastid	38.13	35.84
EER98039	Sorghum	mitochondrion	32.0	32.52

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	MapMan:2.2.1.1.2	Gene3D:3.40.50.920	Gene3D:3.40.50.970
EntrezGene:8058978	UniProt:C5X5A2	EnsemblPlants:EER97019	ProteinID:EER97019	ProteinID:EER97019.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004739	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005759	GO:GO:0005975	GO:GO:0006086	GO:GO:0006091	GO:GO:0006096
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987
GO:GO:0016491	GO:GO:0055114	InterPro:IPR009014	InterPro:PDHB	PFAM:PF02779	PFAM:PF02780
PANTHER:PTHR11624	PANTHER:PTHR11624:SF94	SMART:SM00861	EnsemblPlantsGene:SORBI_3002G259700	SUPFAM:SSF52518	SUPFAM:SSF52922
unigene:Sbi.1512	InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C	UniParc:UPI0001A8388A
RefSeq:XP_002460498.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:64510410..64515889

Molecular Weight (calculated)

40178.3 Da

IEP (calculated)

5.295

GRAVY (calculated)

0.020

Length

375 amino acids

Sequence
(BLAST)

001: MLGAARRQLG SGPMLGQVLR RLRPAAAAAE VARGYSAAAK EMNVRDALNS ALDEEMSADP SVFLMGEEVG EYQGAYKISK GLLDKYGPDR VLDTPITEAG
101: FTGIGVGAAY HGLRPIIEFM TFNFSMQAID HIINSAAKSN YMSAGQISVP IVFRGPNGAA AGVGAQHSQC YAAWYAHVPG LKVLTPYSSE DARGLLKAAI
201: RDPDPVIFLE NELLYGESFP VSAEVLDSSF CLPIGKAKIE REGKDVTITT YSKMVGYALQ AAEILSKEGI SAEVINLRSI RPLDRAAINA SVRKTNRLVT
301: VEEGFPQHGI GAEICMSVVE ESFEYLDAPV ERIAGADVPM PYAANLERMA VPQVDDIVRA AKRACYRAVP MAAAA

Best Arabidopsis Sequence Match ( AT5G50850.1 )
(BLAST)

001: MLGILRQRAI DGASTLRRTR FALVSARSYA AGAKEMTVRD ALNSAIDEEM SADPKVFVMG EEVGQYQGAY KITKGLLEKY GPERVYDTPI TEAGFTGIGV
101: GAAYAGLKPV VEFMTFNFSM QAIDHIINSA AKSNYMSAGQ INVPIVFRGP NGAAAGVGAQ HSQCYAAWYA SVPGLKVLAP YSAEDARGLL KAAIRDPDPV
201: VFLENELLYG ESFPISEEAL DSSFCLPIGK AKIEREGKDV TIVTFSKMVG FALKAAEKLA EEGISAEVIN LRSIRPLDRA TINASVRKTS RLVTVEEGFP
301: QHGVCAEICA SVVEESFSYL DAPVERIAGA DVPMPYAANL ERLALPQIED IVRASKRACY RSK

Arabidopsis Description

PDH2Pyruvate dehydrogenase E1 component subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A178UM82]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.