CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 7
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY24500
CDY31596
CDY33613
CDY55064

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50850.1	CDY24500	AT1G59900.1	21798944
AT5G50850.1	CDY31596	AT1G59900.1	21798944
AT5G50850.1	CDY33613	AT1G59900.1	21798944
AT5G50850.1	CDY55064	AT1G59900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05827	Canola	mitochondrion	96.98	96.98
CDX84881	Canola	mitochondrion	95.6	94.82
CDY16348	Canola	mitochondrion	95.33	94.81
AT5G50850.1	Thale cress	mitochondrion	94.51	94.77
CDY45814	Canola	mitochondrion	95.33	94.55
CDX91560	Canola	mitochondrion	95.05	94.54
TraesCS7D01G263900.2	Wheat	mitochondrion	82.97	82.51
KRH73802	Soybean	mitochondrion	81.32	82.22
TraesCS7A01G263300.1	Wheat	plastid	83.24	82.11
Solyc06g072580.2.1	Tomato	nucleus	82.69	82.02
KRH16935	Soybean	mitochondrion	81.04	81.94
TraesCS7B01G161100.1	Wheat	mitochondrion	82.97	81.84
HORVU7Hr1G055090.3	Barley	mitochondrion	82.97	81.62
KRH14338	Soybean	mitochondrion	80.49	81.39
VIT_01s0146g00310.t01	Wine grape	mitochondrion	81.87	81.2
Os08t0536000-01	Rice	mitochondrion	83.24	81.02
VIT_17s0000g00690.t01	Wine grape	mitochondrion	79.12	80.45
TraesCS5D01G299000.1	Wheat	mitochondrion	82.97	80.32
TraesCS5B01G290600.1	Wheat	mitochondrion	82.97	80.32
TraesCS5A01G291500.1	Wheat	golgi	82.97	80.32
EER97019	Sorghum	mitochondrion	82.69	80.27
KXG25507	Sorghum	mitochondrion	82.42	80.21
Zm00001d006107_P001	Maize	mitochondrion	82.14	79.95
Solyc03g097680.2.1	Tomato	plastid	80.77	79.67
Os09t0509200-01	Rice	mitochondrion	82.14	79.52
PGSC0003DMT400011072	Potato	mitochondrion	80.49	79.4
PGSC0003DMT400069263	Potato	mitochondrion	80.49	76.3
Zm00001d031659_P001	Maize	mitochondrion	82.97	76.07
GSMUA_Achr8P09180_001	Banana	extracellular, mitochondrion, peroxisome	44.23	74.19
Zm00001d021070_P002	Maize	mitochondrion	80.49	71.29
GSMUA_Achr5P25000_001	Banana	mitochondrion, plastid	80.49	70.77
HORVU5Hr1G077200.2	Barley	mitochondrion, plastid	82.14	69.37
CDX90227	Canola	cytosol, mitochondrion, peroxisome	20.33	39.78
CDY54117	Canola	cytosol	12.64	39.66
CDY51472	Canola	plastid	34.62	34.52
CDY63670	Canola	plastid	38.19	34.49
CDY54115	Canola	mitochondrion, peroxisome, plastid	5.49	32.79
CDY26291	Canola	plastid	27.47	31.75
CDY10556	Canola	mitochondrion	30.77	30.94
CDY02436	Canola	mitochondrion	30.22	28.06
CDX90228	Canola	plastid	8.24	22.56
CDY54116	Canola	cytosol	1.92	17.5

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	MapMan:2.2.1.1.2	Gene3D:3.40.50.920	Gene3D:3.40.50.970
GO:A0A078C3S8	EnsemblPlants:CDX71636	ProteinID:CDX71636	ProteinID:CDX71636.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004739	GO:GO:0006086	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00152245001	InterPro:IPR009014	InterPro:PDHB	PFAM:PF02779	PFAM:PF02780	PANTHER:PTHR11624
PANTHER:PTHR11624:SF94	SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II
InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C	UniParc:UPI0004EB0BFE	SEG:seg	:	:

Description

BnaC09g26770D

Coordinates

chrLK031794:+:2083639..2087164

Molecular Weight (calculated)

39191.0 Da

IEP (calculated)

5.889

GRAVY (calculated)

-0.040

Length

364 amino acids

Sequence
(BLAST)

001: MWGILRQRGI DGGGLSLRRT RSASVSARSY AAGSKEMTVR DALNSAIDEE MSADPKVFVM GEEVGQYQGA YKITKGLLEK YGPERVYDTP ITEAGFTGIG
101: VGAAYAGLKP VVEFMTFNFS MQAIDHIINS AAKSNYMSAG QINVPIVFRG PNGAAAGVGA QHSQCYAAWY ASVPGLKVLA PYSAEDARGL LKAAIRDPDP
201: VVFLENELLY GESFPISEEA LDSSFCLPIG KAKIERQGKD VTIVTFSKMV GFALKAAEKL AEEGISAEVI NLRSIRPLDR ATINASVRKT SRLVTVEEGF
301: PQHGVCAEIC ASVVEESFSY LDAPVERIAG ADVPMPYAAN LERLALPQVE DIVRAAKRAC YRSK

Best Arabidopsis Sequence Match ( AT5G50850.1 )
(BLAST)

001: MLGILRQRAI DGASTLRRTR FALVSARSYA AGAKEMTVRD ALNSAIDEEM SADPKVFVMG EEVGQYQGAY KITKGLLEKY GPERVYDTPI TEAGFTGIGV
101: GAAYAGLKPV VEFMTFNFSM QAIDHIINSA AKSNYMSAGQ INVPIVFRGP NGAAAGVGAQ HSQCYAAWYA SVPGLKVLAP YSAEDARGLL KAAIRDPDPV
201: VFLENELLYG ESFPISEEAL DSSFCLPIGK AKIEREGKDV TIVTFSKMVG FALKAAEKLA EEGISAEVIN LRSIRPLDRA TINASVRKTS RLVTVEEGFP
301: QHGVCAEICA SVVEESFSYL DAPVERIAGA DVPMPYAANL ERLALPQIED IVRASKRACY RSK

Arabidopsis Description

PDH2Pyruvate dehydrogenase E1 component subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A178UM82]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.