CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10556	Canola	mitochondrion	82.65	89.5
AT1G55510.1	Thale cress	mitochondrion	80.36	89.49
HORVU6Hr1G017000.1	Barley	cytosol, mitochondrion	27.3	84.92
KRH65916	Soybean	mitochondrion	71.68	78.49
Bra030856.1-P	Field mustard	mitochondrion	75.77	78.36
VIT_06s0004g00190.t01	Wine grape	mitochondrion	71.43	78.21
KRH75712	Soybean	mitochondrion	70.92	78.09
Solyc01g028900.2.1	Tomato	plastid	70.41	77.09
Zm00001d007892_P001	Maize	mitochondrion	69.64	75.21
Os07t0170100-01	Rice	mitochondrion	68.37	72.43
TraesCS6A01G036000.1	Wheat	mitochondrion	68.11	72.16
TraesCS6D01G041600.1	Wheat	mitochondrion	68.62	72.12
HORVU6Hr1G006560.2	Barley	mitochondrion	68.37	72.04
EER98039	Sorghum	mitochondrion	67.6	71.82
GSMUA_Achr8P20340_001	Banana	mitochondrion	67.86	70.93
TraesCS6B01G050600.1	Wheat	mitochondrion	50.26	70.36
HORVU5Hr1G114960.1	Barley	cytosol	35.97	68.78
HORVU3Hr1G031230.1	Barley	mitochondrion, peroxisome, plastid	22.45	56.05
HORVU6Hr1G037690.1	Barley	plastid	23.47	54.76
HORVU1Hr1G025150.1	Barley	mitochondrion, nucleus, peroxisome	19.9	49.68
CDX90227	Canola	cytosol, mitochondrion, peroxisome	14.8	31.18
CDY05827	Canola	mitochondrion	28.57	30.77
CDX91560	Canola	mitochondrion	28.57	30.6
CDY16348	Canola	mitochondrion	28.32	30.33
CDX84881	Canola	mitochondrion	28.32	30.25
CDY45814	Canola	mitochondrion	28.32	30.25
CDX71636	Canola	mitochondrion	28.06	30.22
CDY54117	Canola	cytosol	8.93	30.17
CDY63670	Canola	plastid	28.57	27.79
CDY51472	Canola	plastid	25.77	27.67
CDY26291	Canola	plastid	19.13	23.81
CDX90228	Canola	plastid	5.87	17.29
CDY54115	Canola	mitochondrion, peroxisome, plastid	2.3	14.75
CDY54116	Canola	cytosol	1.28	12.5

Protein Annotations

Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:4.2.7.2.1.2	GO:A0A078EMP9	EnsemblPlants:CDY02436	ProteinID:CDY02436
ProteinID:CDY02436.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	EnsemblPlantsGene:GSBRNA2T00114054001
InterPro:IPR009014	PFAM:PF02779	PFAM:PF02780	PANTHER:PTHR42980	PANTHER:PTHR42980:SF1	SMART:SM00861
SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C
UniParc:UPI0004EE7808	SEG:seg	:	:	:	:

Description

BnaA08g00430D

Coordinates

chrLK031935:-:4837..7110

Molecular Weight (calculated)

43279.3 Da

IEP (calculated)

7.857

GRAVY (calculated)

0.004

Length

392 amino acids

Sequence
(BLAST)

001: MASLLGRFCR KLVVPGSAHG SRMVSTTACD SEAVKSLNLY SAINQALHIA LETDPRSYVF GEDVGFGGVF RCTTGLAERF GKNRVFNTPL CEQGIVGFGI
101: GLAAMGNRAV VEIQFADYIY PAFDQIVNEA AKFRYRSGNQ FNCGGLTIRA PYGAVGHGGH YHSQSPEAFF CHVPGIKVVI PRSPREAKGL LLSSIRDPNP
201: VVFFEPKWLY RQAVEDVPEH DYMIPLSQAE VIREGNDITL VGWGAQLTVM EQACLDAEKE GISCELIDLK TLLPWDKETV EASVKKTGRL LISHEAPVTG
301: GFGAEISATI LERCFLKLEA PVSRVCGLDT PFPLVFEPFY MPTKNKASSS SSLSSPLKKK RHYLIMGLHV WCRYWMQSSP LLITSHSICF FR

Best Arabidopsis Sequence Match ( AT1G55510.1 )
(BLAST)

001: MAALLGRSCR KLSFPSLSHG ARRVSTETGK PLNLYSAINQ ALHIALDTDP RSYVFGEDVG FGGVFRCTTG LAERFGKNRV FNTPLCEQGI VGFGIGLAAM
101: GNRAIVEIQF ADYIYPAFDQ IVNEAAKFRY RSGNQFNCGG LTIRAPYGAV GHGGHYHSQS PEAFFCHVPG IKVVIPRSPR EAKGLLLSCI RDPNPVVFFE
201: PKWLYRQAVE EVPEHDYMIP LSEAEVIREG NDITLVGWGA QLTVMEQACL DAEKEGISCE LIDLKTLLPW DKETVEASVK KTGRLLISHE APVTGGFGAE
301: ISATILERCF LKLEAPVSRV CGLDTPFPLV FEPFYMPTKN KILDAIKSTV NY

Arabidopsis Description

BCDH BETA12-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SAV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.