Factsheet for Solyc01g028900.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 7

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G017000.1	Barley	cytosol, mitochondrion	29.89	84.92
VIT_06s0004g00190.t01	Wine grape	mitochondrion	82.68	82.68
AT1G55510.1	Thale cress	mitochondrion	81.28	82.67
KRH75712	Soybean	mitochondrion	81.56	82.02
KRH65916	Soybean	mitochondrion	81.56	81.56
AT3G13450.1	Thale cress	mitochondrion	79.89	79.89
Zm00001d007892_P001	Maize	mitochondrion	78.77	77.69
CDY10556	Canola	mitochondrion	78.21	77.35
GSMUA_Achr8P20340_001	Banana	mitochondrion	80.17	76.53
EER98039	Sorghum	mitochondrion	77.65	75.34
Os07t0170100-01	Rice	mitochondrion	77.65	75.14
TraesCS6A01G036000.1	Wheat	mitochondrion	77.37	74.86
TraesCS6D01G041600.1	Wheat	mitochondrion	77.93	74.8
HORVU6Hr1G006560.2	Barley	mitochondrion	77.65	74.73
CDY02436	Canola	mitochondrion	77.09	70.41
TraesCS6B01G050600.1	Wheat	mitochondrion	54.75	70.0
Bra030856.1-P	Field mustard	mitochondrion	71.23	67.28
HORVU5Hr1G114960.1	Barley	cytosol	37.71	65.85
HORVU6Hr1G037690.1	Barley	plastid	26.82	57.14
HORVU3Hr1G031230.1	Barley	mitochondrion, peroxisome, plastid	22.63	51.59
HORVU1Hr1G025150.1	Barley	mitochondrion, nucleus, peroxisome	20.11	45.86
Solyc03g097680.2.1	Tomato	plastid	32.4	31.44
Solyc06g072580.2.1	Tomato	nucleus	31.56	30.79
Solyc05g024160.2.1	Tomato	mitochondrion	31.56	30.46
Solyc04g008590.2.1	Tomato	plastid	31.28	27.45
Solyc08g016750.2.1	Tomato	plastid	30.73	26.96

Protein Annotations

Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:4.2.7.2.1.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	InterPro:IPR009014	UniProt:K4AV71	PFAM:PF02779	PFAM:PF02780	PANTHER:PTHR42980
PANTHER:PTHR42980:SF1	SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922	EnsemblPlantsGene:Solyc01g028900.2	EnsemblPlants:Solyc01g028900.2.1
InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C	UniParc:UPI0002762F59	SEG:seg

Description

No Description!

Coordinates

chr1:+:40835395..40845211

Molecular Weight (calculated)

39052.9 Da

IEP (calculated)

6.507

GRAVY (calculated)

0.008

Length

358 amino acids

Sequence
(BLAST)

001: MGSNFRRIGK LAAISSKNQS CMGFSSTVNK NDTSTKSVNL FSAINQALHI ALDSDPRSYV FGEDVGFGGV FRCTTGLADR FGKQRVFNTP LCEQGIVGFA
101: IGLAAMDNRA VAEIQFADYI FPAFDQIVNE AAKFRYRSGN QFNCGGLTIR APYGAVGHGG HYHSQSPESF FCHVPGIKVV IPRSPQQAKG LLLSSIRDPN
201: PVVFFEPKLL YRMAVEEVPK DDYMLPLSEA EVLREGTDIT LVGWGAQLSI MEQACVEAAK EGISCELIDL KTLIPWDKET VEASVKKTGR LLISHEAPVT
301: GGFGAEISAS IVERCFTRLE APVARVCGLD TPFPLVFEPF YLPTTNKILD AIKSTVSY

Best Arabidopsis Sequence Match ( AT3G13450.1 )
(BLAST)

001: MAAALVRRFC RGSSFPVSGH GYRMLSTVEN VSESGKSMNL YSAINQALHI ALETDPRSYV FGEDVGFGGV FRCTTGLAER FGKSRVFNTP LCEQGIVGFG
101: IGLAAMGNRV IAEIQFADYI FPAFDQIVNE AAKFRYRSGN QFNCGGLTIR APYGAVGHGG HYHSQSPEAF FCHVPGIKVV IPRSPREAKG LLLSSIRDPN
201: PVVFFEPKWL YRQAVEDVPE DDYMIPLSEA EVMREGSDIT LVGWGAQLTI MEQACLDAEN EGISCELIDL KTLIPWDKEI VETSVRKTGR LLISHEAPVT
301: GGFGAEIAAT IVERCFLRLE APVSRVCGLD TPFPLVFEPF YMPTKNKILD AIRSTVNY

Arabidopsis Description

DIN42-oxoisovalerate dehydrogenase subunit beta 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LDY2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.