Factsheet for GSMUA_Achr8P20340_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G017000.1	Barley	cytosol, mitochondrion	28.8	85.71
VIT_06s0004g00190.t01	Wine grape	mitochondrion	78.93	82.68
KRH75712	Soybean	mitochondrion	77.07	81.18
AT1G55510.1	Thale cress	mitochondrion	76.0	80.97
Solyc01g028900.2.1	Tomato	plastid	76.53	80.17
Zm00001d007892_P001	Maize	mitochondrion	77.07	79.61
KRH65916	Soybean	mitochondrion	76.0	79.61
TraesCS6A01G036000.1	Wheat	mitochondrion	77.07	78.11
TraesCS6D01G041600.1	Wheat	mitochondrion	77.6	78.02
Os07t0170100-01	Rice	mitochondrion	76.8	77.84
HORVU6Hr1G006560.2	Barley	mitochondrion	77.07	77.69
EER98039	Sorghum	mitochondrion	75.2	76.42
AT3G13450.1	Thale cress	mitochondrion	72.8	76.26
CDY10556	Canola	mitochondrion	71.47	74.03
TraesCS6B01G050600.1	Wheat	mitochondrion	53.87	72.14
HORVU5Hr1G114960.1	Barley	cytosol	37.6	68.78
CDY02436	Canola	mitochondrion	70.93	67.86
Bra030856.1-P	Field mustard	mitochondrion	65.6	64.91
HORVU3Hr1G031230.1	Barley	mitochondrion, peroxisome, plastid	23.47	56.05
HORVU6Hr1G037690.1	Barley	plastid	24.53	54.76
HORVU1Hr1G025150.1	Barley	mitochondrion, nucleus, peroxisome	21.07	50.32
GSMUA_Achr5P02560_001	Banana	plastid	27.2	27.49
GSMUA_Achr5P25000_001	Banana	mitochondrion, plastid	29.6	26.81
GSMUA_Achr8P09180_001	Banana	extracellular, mitochondrion, peroxisome	15.2	26.27
GSMUA_Achr4P31470_001	Banana	mitochondrion	17.33	24.9
GSMUA_Achr2P12960_001	Banana	vacuole	1.87	11.29

Protein Annotations

Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:4.2.7.2.1.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	EnsemblPlantsGene:GSMUA_Achr8G20340_001	EnsemblPlants:GSMUA_Achr8P20340_001	EnsemblPlants:GSMUA_Achr8T20340_001	InterPro:IPR009014	UniProt:M0TS37
PFAM:PF02779	PFAM:PF02780	PANTHER:PTHR42980	PANTHER:PTHR42980:SF1	SMART:SM00861	SUPFAM:SSF52518
SUPFAM:SSF52922	InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C	UniParc:UPI000295214F

Description

2-oxoisovalerate dehydrogenase subunit beta, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr8G20340_001]

Coordinates

chr8:-:25374509..25380806

Molecular Weight (calculated)

41259.8 Da

IEP (calculated)

7.103

GRAVY (calculated)

0.038

Length

375 amino acids

Sequence
(BLAST)

001: MATAMALRLF GRRTSIAARG FSSSCETEKA AKDGKPINLF SAINQALHIA LDTDPRAYVF GEDVRFGGVF RCTTGLADRF GRSRVFNTPL CEQGIVGFAI
101: GLAAMGNRAI AEIQFADYIY PAFDQALLLQ WLTPLKPRTQ LLFIVNEAAK FRYRSGNEFN CGGLTIRTPY GAVGHGGHYH SQSPESFFCH VPGLKVVIPR
201: SPQQAKGLLL SCIRDPNPSI FFEPKWLYRL AVEEVPEHDY MLPLSEAEVI RQGSDITLVG WGAQLSVLEQ ACVEAAKEGI SCELIDLRTL IPWDKETVEA
301: SVRKTGKLLI SHEAPVTGGF GAEISASIAE SCFLRLEAPV ARICGLDTPF PLVYEQFYMP TKNKILDAIK ATVNY

Best Arabidopsis Sequence Match ( AT1G55510.1 )
(BLAST)

001: MAALLGRSCR KLSFPSLSHG ARRVSTETGK PLNLYSAINQ ALHIALDTDP RSYVFGEDVG FGGVFRCTTG LAERFGKNRV FNTPLCEQGI VGFGIGLAAM
101: GNRAIVEIQF ADYIYPAFDQ IVNEAAKFRY RSGNQFNCGG LTIRAPYGAV GHGGHYHSQS PEAFFCHVPG IKVVIPRSPR EAKGLLLSCI RDPNPVVFFE
201: PKWLYRQAVE EVPEHDYMIP LSEAEVIREG NDITLVGWGA QLTVMEQACL DAEKEGISCE LIDLKTLLPW DKETVEASVK KTGRLLISHE APVTGGFGAE
301: ISATILERCF LKLEAPVSRV CGLDTPFPLV FEPFYMPTKN KILDAIKSTV NY

Arabidopsis Description

BCDH BETA12-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SAV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.