Factsheet for Zm00001d007892_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G017000.1	Barley	cytosol, mitochondrion	31.68	91.27
EER98039	Sorghum	mitochondrion	87.33	85.91
Os07t0170100-01	Rice	mitochondrion	86.78	85.14
TraesCS6A01G036000.1	Wheat	mitochondrion	86.23	84.59
HORVU6Hr1G006560.2	Barley	mitochondrion	85.67	83.6
TraesCS6D01G041600.1	Wheat	mitochondrion	85.67	83.38
AT1G55510.1	Thale cress	mitochondrion	78.24	80.68
KRH75712	Soybean	mitochondrion	77.69	79.21
TraesCS6B01G050600.1	Wheat	mitochondrion	60.88	78.93
Solyc01g028900.2.1	Tomato	plastid	77.69	78.77
AT3G13450.1	Thale cress	mitochondrion	77.14	78.21
VIT_06s0004g00190.t01	Wine grape	mitochondrion	77.14	78.21
KRH65916	Soybean	mitochondrion	76.86	77.93
GSMUA_Achr8P20340_001	Banana	mitochondrion	79.61	77.07
CDY10556	Canola	mitochondrion	76.03	76.24
HORVU5Hr1G114960.1	Barley	cytosol	41.05	72.68
CDY02436	Canola	mitochondrion	75.21	69.64
Bra030856.1-P	Field mustard	mitochondrion	68.59	65.7
HORVU3Hr1G031230.1	Barley	mitochondrion, peroxisome, plastid	25.62	59.24
HORVU6Hr1G037690.1	Barley	plastid	27.0	58.33
HORVU1Hr1G025150.1	Barley	mitochondrion, nucleus, peroxisome	22.86	52.87
Zm00001d000227_P001	Maize	cytosol	28.1	31.97
Zm00001d006107_P001	Maize	mitochondrion	31.13	30.21
Zm00001d033225_P002	Maize	plastid	30.3	28.72
Zm00001d031659_P001	Maize	mitochondrion	31.13	28.46
Zm00001d021070_P002	Maize	mitochondrion	30.58	27.01

Protein Annotations

EntrezGene:100273293	Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:4.2.7.2.1.2	UniProt:B4FUC1	EMBL:BT040709
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	InterPro:IPR009014	ProteinID:ONM27833.1
PFAM:PF02779	PFAM:PF02780	PANTHER:PTHR42980	PANTHER:PTHR42980:SF1	SMART:SM00861	SUPFAM:SSF52518
SUPFAM:SSF52922	InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C	UniParc:UPI00017B7612
EnsemblPlantsGene:Zm00001d007892	EnsemblPlants:Zm00001d007892_P001	EnsemblPlants:Zm00001d007892_T001	SEG:seg	:	:

Description

2-oxoisovalerate dehydrogenase subunit beta 1 mitochondrial

Coordinates

chr2:+:241888030..241891837

Molecular Weight (calculated)

39209.1 Da

IEP (calculated)

6.768

GRAVY (calculated)

-0.033

Length

363 amino acids

Sequence
(BLAST)

001: MAAKGLREVG RRRAAEVGRR CLSGGSAGPP APAAKRKEGG KAVNLFTAVN QALHIALDTD PRAYVFGEDV GFGGVFRCTT GLADRFGKSR VFNTPLCEQG
101: IAGFAIGLAA MGNRAIAEIQ FADYIFPAFD QIVNEAAKFR YRSGNEFNCG GLTIRTPYGA VGHGGHYHSQ SPEAFFCHVP GLKVVIPRSP REAKGLLLAS
201: IRDPNPVVFF EPKWLYRLAV EEVPEEDYML PLSEAEVIRE GSDITLVGWG AQLAVLKEAC EDAAKDGVSC ELIDLKTLVP WDKETVEASV KKTGKLLVSH
301: EAPVTGGFGA EIAASIAERC FQRLEAPVAR VCGLDTPFPL VYEPFYMPTK NKVLDAIKAT VDF

Best Arabidopsis Sequence Match ( AT1G55510.1 )
(BLAST)

001: MAALLGRSCR KLSFPSLSHG ARRVSTETGK PLNLYSAINQ ALHIALDTDP RSYVFGEDVG FGGVFRCTTG LAERFGKNRV FNTPLCEQGI VGFGIGLAAM
101: GNRAIVEIQF ADYIYPAFDQ IVNEAAKFRY RSGNQFNCGG LTIRAPYGAV GHGGHYHSQS PEAFFCHVPG IKVVIPRSPR EAKGLLLSCI RDPNPVVFFE
201: PKWLYRQAVE EVPEHDYMIP LSEAEVIREG NDITLVGWGA QLTVMEQACL DAEKEGISCE LIDLKTLLPW DKETVEASVK KTGRLLISHE APVTGGFGAE
301: ISATILERCF LKLEAPVSRV CGLDTPFPLV FEPFYMPTKN KILDAIKSTV NY

Arabidopsis Description

BCDH BETA12-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SAV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.