Factsheet for HORVU6Hr1G017000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, plastid
iPSORT:	plastid
MultiLoc:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G114960.1	Barley	cytosol	78.57	48.29
TraesCS6B01G050600.1	Wheat	mitochondrion	91.27	41.07
HORVU6Hr1G006560.2	Barley	mitochondrion	93.65	31.72
Zm00001d007892_P001	Maize	mitochondrion	91.27	31.68
TraesCS6A01G036000.1	Wheat	mitochondrion	92.86	31.62
TraesCS6D01G041600.1	Wheat	mitochondrion	92.86	31.37
EER98039	Sorghum	mitochondrion	91.27	31.17
Os07t0170100-01	Rice	mitochondrion	90.48	30.81
AT3G13450.1	Thale cress	mitochondrion	86.51	30.45
AT1G55510.1	Thale cress	mitochondrion	84.92	30.4
KRH75712	Soybean	mitochondrion	84.92	30.06
HORVU3Hr1G031230.1	Barley	mitochondrion, peroxisome, plastid	37.3	29.94
KRH65916	Soybean	mitochondrion	84.92	29.89
Solyc01g028900.2.1	Tomato	plastid	84.92	29.89
VIT_06s0004g00190.t01	Wine grape	mitochondrion	83.33	29.33
CDY10556	Canola	mitochondrion	84.13	29.28
HORVU6Hr1G037690.1	Barley	plastid	38.89	29.17
GSMUA_Achr8P20340_001	Banana	mitochondrion	85.71	28.8
Bra030856.1-P	Field mustard	mitochondrion	84.92	28.23
CDY02436	Canola	mitochondrion	84.92	27.3
HORVU1Hr1G025150.1	Barley	mitochondrion, nucleus, peroxisome	28.57	22.93
HORVU7Hr1G055090.3	Barley	mitochondrion	40.48	13.78
HORVU5Hr1G077200.2	Barley	mitochondrion, plastid	40.48	11.83
HORVU0Hr1G009910.2	Barley	plastid	36.51	11.68
HORVU5Hr1G092920.4	Barley	plastid	35.71	9.68

Protein Annotations

EnsemblPlants:HORVU6Hr1G017000.1	EnsemblPlantsGene:HORVU6Hr1G017000	Gene3D:3.40.50.970	InterPro:THDP-binding	InterPro:Transketolase-like_Pyr-bd	PANTHER:PTHR42980
PANTHER:PTHR42980:SF1	PFAM:PF02779	SMART:SM00861	SUPFAM:SSF52518	UniParc:UPI000B47069B	UniProt:A0A287TFL1
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chrchr6H:-:39218173..39220433

Molecular Weight (calculated)

13981.8 Da

IEP (calculated)

8.239

GRAVY (calculated)

0.030

Length

126 amino acids

Sequence
(BLAST)

001: QGIAGFAIGL AAMDNRAIAE IQFAHYIFPA FDQIVNEAAK FRYRSGNEFT CGGLTIRSPY GAVGHGGHYH SQSPEAFFCH VPGLKVVIPR SPREAKGLLL
101: ASIRDPNPLI FFEPKWLYRL SVEEVF

Best Arabidopsis Sequence Match ( AT1G55510.1 )
(BLAST)

001: MAALLGRSCR KLSFPSLSHG ARRVSTETGK PLNLYSAINQ ALHIALDTDP RSYVFGEDVG FGGVFRCTTG LAERFGKNRV FNTPLCEQGI VGFGIGLAAM
101: GNRAIVEIQF ADYIYPAFDQ IVNEAAKFRY RSGNQFNCGG LTIRAPYGAV GHGGHYHSQS PEAFFCHVPG IKVVIPRSPR EAKGLLLSCI RDPNPVVFFE
201: PKWLYRQAVE EVPEHDYMIP LSEAEVIREG NDITLVGWGA QLTVMEQACL DAEKEGISCE LIDLKTLLPW DKETVEASVK KTGRLLISHE APVTGGFGAE
301: ISATILERCF LKLEAPVSRV CGLDTPFPLV FEPFYMPTKN KILDAIKSTV NY

Arabidopsis Description

BCDH BETA12-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SAV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.