Factsheet for TraesCS6B01G050600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G017000.1	Barley	cytosol, mitochondrion	41.07	91.27
HORVU5Hr1G114960.1	Barley	cytosol	52.86	72.2
TraesCS6D01G041600.1	Wheat	mitochondrion	95.71	71.85
TraesCS6A01G036000.1	Wheat	mitochondrion	91.79	69.46
HORVU6Hr1G006560.2	Barley	mitochondrion	90.0	67.74
Zm00001d007892_P001	Maize	mitochondrion	78.93	60.88
Os07t0170100-01	Rice	mitochondrion	79.64	60.27
EER98039	Sorghum	mitochondrion	79.29	60.16
HORVU3Hr1G031230.1	Barley	mitochondrion, peroxisome, plastid	32.86	58.6
AT1G55510.1	Thale cress	mitochondrion	71.79	57.1
HORVU6Hr1G037690.1	Barley	plastid	33.93	56.55
KRH75712	Soybean	mitochondrion	70.36	55.34
KRH65916	Soybean	mitochondrion	70.71	55.31
AT3G13450.1	Thale cress	mitochondrion	70.71	55.31
Solyc01g028900.2.1	Tomato	plastid	70.0	54.75
VIT_06s0004g00190.t01	Wine grape	mitochondrion	69.64	54.47
CDY10556	Canola	mitochondrion	70.0	54.14
GSMUA_Achr8P20340_001	Banana	mitochondrion	72.14	53.87
Bra030856.1-P	Field mustard	mitochondrion	71.07	52.51
HORVU1Hr1G025150.1	Barley	mitochondrion, nucleus, peroxisome	28.93	51.59
CDY02436	Canola	mitochondrion	70.36	50.26
TraesCS5B01G290600.1	Wheat	mitochondrion	35.71	26.6
TraesCS7B01G161100.1	Wheat	mitochondrion	31.79	24.12
TraesCS5B01G376400.1	Wheat	plastid	33.21	23.66
TraesCS5B01G030400.1	Wheat	plastid	31.07	22.14

Protein Annotations

EnsemblPlants:TraesCS6B01G050600.1	EnsemblPlantsGene:TraesCS6B01G050600	Gene3D:3.40.50.920	Gene3D:3.40.50.970	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	InterPro:IPR009014	InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd
PANTHER:PTHR42980	PANTHER:PTHR42980:SF1	PFAM:PF02779	SEG:seg	SMART:SM00861	SUPFAM:SSF52518
TIGR:cd07036	MapMan:4.2.7.2.1.2	:	:	:	:

Description

No Description!

Coordinates

chr6B:-:30035398..30038539

Molecular Weight (calculated)

29788.4 Da

IEP (calculated)

7.887

GRAVY (calculated)

-0.053

Length

280 amino acids

Sequence
(BLAST)

001: MATRALREVA GRRSAGAAGI GGSRRFSDSA AAAAAAAPAG AAERGDGGGG KAVNLFTAVN QALHIALDTD PRSYVFGEDV GFGGVFRCTT GLADRFGKQR
101: VFNTPLCEQG IAGFAIGLAA MGNRAIAEIQ FADYIFPAFD QIVNEAAKFR YRSGNEFNCG GLTIRSPYGA VGHGGHYHSQ SPEAFFCHVP GLKVVIPRSP
201: REAKGLLLAS IRDPNPVIFF EPKWLYRLSL EEVPEGDYML PLSQAEVIRK GSDITLIGWG AQLAVLEQAC EDASKVNYSR

Best Arabidopsis Sequence Match ( AT1G55510.1 )
(BLAST)

001: MAALLGRSCR KLSFPSLSHG ARRVSTETGK PLNLYSAINQ ALHIALDTDP RSYVFGEDVG FGGVFRCTTG LAERFGKNRV FNTPLCEQGI VGFGIGLAAM
101: GNRAIVEIQF ADYIYPAFDQ IVNEAAKFRY RSGNQFNCGG LTIRAPYGAV GHGGHYHSQS PEAFFCHVPG IKVVIPRSPR EAKGLLLSCI RDPNPVVFFE
201: PKWLYRQAVE EVPEHDYMIP LSEAEVIREG NDITLVGWGA QLTVMEQACL DAEKEGISCE LIDLKTLLPW DKETVEASVK KTGRLLISHE APVTGGFGAE
301: ISATILERCF LKLEAPVSRV CGLDTPFPLV FEPFYMPTKN KILDAIKSTV NY

Arabidopsis Description

BCDH BETA12-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SAV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.