Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G374500.1 | Wheat | plastid | 99.75 | 99.75 |
| TraesCS5D01G384100.1 | Wheat | golgi | 99.24 | 99.24 |
| Os03t0645100-01 | Rice | plastid | 79.64 | 95.72 |
| CDX90227 | Canola | cytosol, mitochondrion, peroxisome | 43.26 | 91.4 |
| Bra032361.1-P | Field mustard | cytosol, mitochondrion, peroxisome | 69.21 | 88.6 |
| EER93752 | Sorghum | plastid | 86.77 | 88.11 |
| Zm00001d033225_P002 | Maize | plastid | 84.22 | 86.42 |
| TraesCS5B01G030400.1 | Wheat | plastid | 79.39 | 79.39 |
| VIT_10s0003g03770.t01 | Wine grape | plastid | 75.83 | 76.21 |
| KRH05520 | Soybean | plastid | 77.1 | 75.19 |
| VIT_04s0043g00720.t01 | Wine grape | plastid | 77.1 | 74.81 |
| KRH15497 | Soybean | plastid | 77.1 | 74.81 |
| KRH42550 | Soybean | plastid | 77.1 | 74.63 |
| KRH58644 | Soybean | nucleus | 76.84 | 74.57 |
| HORVU5Hr1G092920.4 | Barley | plastid | 87.79 | 74.19 |
| GSMUA_Achr5P02560_001 | Banana | plastid | 69.72 | 73.85 |
| CDY54115 | Canola | mitochondrion, peroxisome, plastid | 11.45 | 73.77 |
| Bra010796.1-P | Field mustard | plastid | 75.57 | 73.7 |
| CDY63670 | Canola | plastid | 75.06 | 73.2 |
| AT1G30120.1 | Thale cress | plastid | 75.32 | 72.91 |
| GSMUA_Achr2P12960_001 | Banana | vacuole | 11.45 | 72.58 |
| Solyc08g016750.2.1 | Tomato | plastid | 75.32 | 72.55 |
| Solyc04g008590.2.1 | Tomato | plastid | 75.32 | 72.55 |
| AT2G34590.1 | Thale cress | plastid | 74.05 | 71.67 |
| CDY51472 | Canola | plastid | 66.41 | 71.51 |
| PGSC0003DMT400019358 | Potato | plastid | 75.57 | 71.22 |
| GSMUA_Achr4P31470_001 | Banana | mitochondrion | 47.07 | 70.88 |
| PGSC0003DMT400080554 | Potato | plastid | 75.06 | 67.66 |
| CDY26291 | Canola | plastid | 53.44 | 66.67 |
| CDY54117 | Canola | cytosol | 19.08 | 64.66 |
| CDY54116 | Canola | cytosol | 4.58 | 45.0 |
| CDX90228 | Canola | plastid | 13.74 | 40.6 |
| TraesCS7B01G161100.1 | Wheat | mitochondrion | 36.64 | 39.02 |
| TraesCS5B01G290600.1 | Wheat | mitochondrion | 36.64 | 38.3 |
| TraesCS6B01G050600.1 | Wheat | mitochondrion | 23.66 | 33.21 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G376400.1 | EnsemblPlantsGene:TraesCS5B01G376400 | Gene3D:3.40.50.920 | Gene3D:3.40.50.970 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0008150 | GO:GO:0008152 | InterPro:IPR009014 | InterPro:THDP-binding | InterPro:Transketo_C/PFOR_II | InterPro:Transketolase-like_Pyr-bd |
| InterPro:Transketolase_C | PANTHER:PTHR11624 | PANTHER:PTHR11624:SF93 | PFAM:PF02779 | PFAM:PF02780 | SEG:seg |
| SMART:SM00861 | SUPFAM:SSF52518 | SUPFAM:SSF52922 | TIGR:cd07036 | MapMan:5.1.2.2.1.2 | : |
Description
No Description!
Coordinates
chr5B:+:554511742..554514821
Molecular Weight (calculated)
42130.9 Da
IEP (calculated)
6.581
GRAVY (calculated)
0.003
Length
393 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAASSLHVA APAATPRVGS AGPKSASAAR SVRVARSGAA ARHGGRLVAC AAVATKADAP ASEAASKSEG HEVLLFEALR EGLMEEMQAD PTVCVFGEDV
101: GHYGGSYKVT KGLADMFGDL RVLDTPIAEN SFTGMGVGAG MKGLRPVVEG MNMGFLLLAY NQISNNCGML HYTSGGQFKI PLVIRGPGGV GRQLGAEHSQ
201: RLESYFQSIP GLQMVACSTP YNAKGLMKAA IRSENPVVLF EHVLLYNLKE KIPDEEYTLC LEEAEMVRPG EHVTILTYSR MRYHVMQAAK TLVNKGYDPE
301: VIDIRSLKPF DLHTIGNSIK KTHRVLIVEE CMRTGGIGAS LRSAIIDNFW DYLDTPIMCL SSQDVPTPYA ATLEDATVVQ PAQIVAAVEQ ICQ
101: GHYGGSYKVT KGLADMFGDL RVLDTPIAEN SFTGMGVGAG MKGLRPVVEG MNMGFLLLAY NQISNNCGML HYTSGGQFKI PLVIRGPGGV GRQLGAEHSQ
201: RLESYFQSIP GLQMVACSTP YNAKGLMKAA IRSENPVVLF EHVLLYNLKE KIPDEEYTLC LEEAEMVRPG EHVTILTYSR MRYHVMQAAK TLVNKGYDPE
301: VIDIRSLKPF DLHTIGNSIK KTHRVLIVEE CMRTGGIGAS LRSAIIDNFW DYLDTPIMCL SSQDVPTPYA ATLEDATVVQ PAQIVAAVEQ ICQ
001: MSAILQGAGA ATALSPFNSI DSNKLVAPSR SSLSVRSKRY IVAGSDSKSF GSSLVARRSE PLIPNAVTTK ADTAASSTSS KPGHELLLFE ALQEGLEEEM
101: DRDPHVCVMG EDVGHYGGSY KVTKGLADKF GDLRVLDTPI CENAFTGMGI GAAMTGLRPV IEGMNMGFLL LAFNQISNNC GMLHYTSGGQ FTIPVVIRGP
201: GGVGRQLGAE HSQRLESYFQ SIPGIQMVAC STPYNAKGLM KAAIRSENPV ILFEHVLLYN LKESIPDEEY ICNLEEAEMV RPGEHITILT YSRMRYHVMQ
301: AAKTLVNKGY DPEVIDIRSL KPFDLYTIGN SVKKTHRVLI VEECMRTGGI GASLTAAINE NFHDYLDAPV MCLSSQDVPT PYAGTLEEWT VVQPAQIVTA
401: VEQLCQ
101: DRDPHVCVMG EDVGHYGGSY KVTKGLADKF GDLRVLDTPI CENAFTGMGI GAAMTGLRPV IEGMNMGFLL LAFNQISNNC GMLHYTSGGQ FTIPVVIRGP
201: GGVGRQLGAE HSQRLESYFQ SIPGIQMVAC STPYNAKGLM KAAIRSENPV ILFEHVLLYN LKESIPDEEY ICNLEEAEMV RPGEHITILT YSRMRYHVMQ
301: AAKTLVNKGY DPEVIDIRSL KPFDLYTIGN SVKKTHRVLI VEECMRTGGI GASLTAAINE NFHDYLDAPV MCLSSQDVPT PYAGTLEEWT VVQPAQIVTA
401: VEQLCQ
Arabidopsis Description
E1-BETA-2Pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64688]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.