Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 7
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G504600.1 | |
| TraesCS2D01G505300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G51560.1 | TraesCS2A01G504600.1 | AT1G22920.1 | 21798944 |
| AT1G51560.1 | TraesCS2D01G505300.1 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G150400.1 | Wheat | plastid | 99.72 | 99.72 |
| TraesCS7D01G252700.2 | Wheat | plastid | 98.6 | 98.6 |
| KXG25584 | Sorghum | plastid | 80.39 | 79.06 |
| Os08t0517500-01 | Rice | plastid | 81.79 | 78.71 |
| Zm00001d031540_P002 | Maize | plastid | 77.03 | 75.76 |
| HORVU7Hr1G052520.1 | Barley | plastid | 80.67 | 72.54 |
| CDY11726 | Canola | cytosol | 27.17 | 66.9 |
| KRH47293 | Soybean | nucleus | 65.27 | 61.15 |
| PGSC0003DMT400068172 | Potato | cytosol, mitochondrion, peroxisome | 23.25 | 61.03 |
| KRH44611 | Soybean | nucleus | 64.71 | 59.84 |
| VIT_09s0054g00600.t01 | Wine grape | plastid | 65.27 | 58.84 |
| CDX82215 | Canola | plastid | 62.75 | 58.64 |
| CDY37313 | Canola | plastid | 62.47 | 58.53 |
| CDY32407 | Canola | plastid | 62.18 | 58.42 |
| Bra001814.1-P | Field mustard | plastid | 61.9 | 57.85 |
| Bra031254.1-P | Field mustard | plastid | 63.87 | 57.72 |
| Bra023902.1-P | Field mustard | plastid | 63.03 | 57.69 |
| AT1G51560.1 | Thale cress | plastid | 63.31 | 57.65 |
| CDY50076 | Canola | plastid | 63.03 | 57.54 |
| CDY27539 | Canola | plastid | 63.31 | 57.51 |
| AT3G21140.1 | Thale cress | plastid | 62.18 | 57.36 |
| CDY19583 | Canola | plastid | 63.59 | 57.32 |
| CDY43915 | Canola | plastid | 63.03 | 57.25 |
| Solyc06g063290.2.1 | Tomato | plastid | 64.71 | 57.04 |
| Bra030435.1-P | Field mustard | plastid | 62.47 | 56.74 |
| PGSC0003DMT400068174 | Potato | plastid | 64.15 | 56.54 |
| GSMUA_AchrUn_... | Banana | plastid | 63.03 | 56.11 |
| CDX87825 | Canola | plastid | 61.62 | 55.84 |
| GSMUA_Achr7P04940_001 | Banana | plastid | 57.14 | 51.91 |
| TraesCS2A01G184900.1 | Wheat | unclear | 17.09 | 17.89 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G254200.1 | EnsemblPlantsGene:TraesCS7A01G254200 | Gene3D:2.30.110.10 | Gene3D:3.20.180.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0048037 | InterPro:Haem_oxidase_HugZ-like_sf | InterPro:IPR012349 | InterPro:IPR037119 | InterPro:Split_barrel_FMN-bd | PANTHER:PTHR13343 |
| PANTHER:PTHR13343:SF16 | PFAM:PF13883 | SEG:seg | SUPFAM:SSF50475 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr7A:+:240085658..240089251
Molecular Weight (calculated)
38638.9 Da
IEP (calculated)
9.458
GRAVY (calculated)
-0.268
Length
357 amino acids
Sequence
(BLAST)
(BLAST)
001: MEALAGAAAS SALLPAFPAH QPHSRVALRA RPCGPLRAAA GGGGKDDAAK PNGTPVVKLK VDPSQNGALG PVTTDKSRTT SSTNSTPDSS GSRAGLFRTP
101: ISGGVQSATF AHGLPPPALA VRNLMEQARF AHLCTVMSGM HHRRAGYPFG SLVDFANDSM GHPIFSLSPL AIHTRNLLSD PRCTLVVQVP GWSGLSNARV
201: TIFGDVYPLP AEQQEWAHKQ YVAKHQQWAS QQWGNFYYYR MQNISDIYFI GGFGTVAWVD VKQYETIQPD KIAVDGGEQS LKELNAIFSK PLREFMSAEG
301: EVDDAALISV DSKGIDIRVR QGAQFNIQRL AFDVPYKVET LEEAKRALHK IIKTSSK
101: ISGGVQSATF AHGLPPPALA VRNLMEQARF AHLCTVMSGM HHRRAGYPFG SLVDFANDSM GHPIFSLSPL AIHTRNLLSD PRCTLVVQVP GWSGLSNARV
201: TIFGDVYPLP AEQQEWAHKQ YVAKHQQWAS QQWGNFYYYR MQNISDIYFI GGFGTVAWVD VKQYETIQPD KIAVDGGEQS LKELNAIFSK PLREFMSAEG
301: EVDDAALISV DSKGIDIRVR QGAQFNIQRL AFDVPYKVET LEEAKRALHK IIKTSSK
001: MDAAIFTSVY VCNIPKTKKA FFNPNPPALS SSSCWLCNSQ AKQIIKLRIR EGSNQGLLRV HALFNNEEAS SESEDKNGFG LLPADIFSLP QEKFGSNVSG
101: EKDSENIIDV ETSLAVPHGG GTRAGLFRTP ISGGVQSATS AHGLPRPALA VRNLMEQARF AHLCTVMSKM HHRREGYPFG SLVDFAPDPM GHPIFSFSPL
201: AIHTRNILAE PRCTLVVQIP GWSCLSNARV TLFGDVYPLP EEQQEWAHKQ YMLKHHQGPS QQWGNFHYFR MQNISDIYFI GGFGTVAWIN VNEYETLQPD
301: KIAVDGGEQN LKELNAIFSK PLRELLSSEA ELDDAAIISI DSKGIDIRVR QGAQFKIQRL AFEESHGVET LEEAKSALWK VIEKGKLHNL QK
101: EKDSENIIDV ETSLAVPHGG GTRAGLFRTP ISGGVQSATS AHGLPRPALA VRNLMEQARF AHLCTVMSKM HHRREGYPFG SLVDFAPDPM GHPIFSFSPL
201: AIHTRNILAE PRCTLVVQIP GWSCLSNARV TLFGDVYPLP EEQQEWAHKQ YMLKHHQGPS QQWGNFHYFR MQNISDIYFI GGFGTVAWIN VNEYETLQPD
301: KIAVDGGEQN LKELNAIFSK PLRELLSSEA ELDDAAIISI DSKGIDIRVR QGAQFKIQRL AFEESHGVET LEEAKSALWK VIEKGKLHNL QK
Arabidopsis Description
Pyridoxamine 5'-phosphate oxidase family protein [Source:UniProtKB/TrEMBL;Acc:Q9C8K8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.