Factsheet for PGSC0003DMT400068172

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, cytosol

Predictor Summary:

cytosol 3
peroxisome 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400023896
PGSC0003DMT400069203

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51560.1	PGSC0003DMT400023896	AT1G22920.1	21798944
AT1G51560.1	PGSC0003DMT400069203	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11726	Canola	cytosol	52.21	48.97
Zm00001d037710_P001	Maize	cytosol	41.18	44.09
PGSC0003DMT400068174	Potato	plastid	88.24	29.63
Solyc06g063290.2.1	Tomato	plastid	86.76	29.14
KRH47293	Soybean	nucleus	76.47	27.3
KRH44611	Soybean	nucleus	76.47	26.94
VIT_09s0054g00600.t01	Wine grape	plastid	75.74	26.01
CDY37313	Canola	plastid	72.79	25.98
Bra001814.1-P	Field mustard	plastid	71.32	25.39
CDX82215	Canola	plastid	71.32	25.39
Bra023902.1-P	Field mustard	plastid	72.79	25.38
CDY32407	Canola	plastid	70.59	25.26
CDY27539	Canola	plastid	72.79	25.19
CDY50076	Canola	plastid	71.32	24.81
CDY19583	Canola	plastid	71.32	24.49
Bra031254.1-P	Field mustard	plastid	70.59	24.3
AT3G21140.1	Thale cress	plastid	69.12	24.29
AT1G51560.1	Thale cress	plastid	69.85	24.23
TraesCS7A01G254200.1	Wheat	nucleus, plastid	61.03	23.25
TraesCS7B01G150400.1	Wheat	plastid	61.03	23.25
TraesCS7D01G252700.2	Wheat	plastid	61.03	23.25
Os08t0517500-01	Rice	plastid	63.24	23.18
CDY43915	Canola	plastid	66.18	22.9
CDX87825	Canola	plastid	66.18	22.84
Bra030435.1-P	Field mustard	plastid	64.71	22.39
Os02t0148400-01	Rice	plastid	63.97	22.08
GSMUA_Achr7P19630_001	Banana	plastid	64.71	21.89
GSMUA_Achr7P04940_001	Banana	plastid	63.24	21.88
GSMUA_AchrUn_...	Banana	plastid	63.97	21.7
HORVU7Hr1G052520.1	Barley	plastid	61.03	20.91
PGSC0003DMT400083485	Potato	mitochondrion, plastid	16.18	6.85
KXG25583	Sorghum	cytosol, mitochondrion	1.47	1.9

Protein Annotations

EnsemblPlants:PGSC0003DMT400068172	EnsemblPlantsGene:PGSC0003DMG402026514	Gene3D:3.20.180.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0048037
InterPro:Haem_oxidase_HugZ-like_sf	InterPro:IPR037119	PANTHER:PTHR13343	PANTHER:PTHR13343:SF16	PGSC:PGSC0003DMG402026514	SUPFAM:SSF50475
UniParc:UPI00029480DB	UniProt:M1CIK1	MapMan:35.2	:	:	:

Description

FMN binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG402026514]

Coordinates

chr6:-:48069954..48071239

Molecular Weight (calculated)

15372.2 Da

IEP (calculated)

5.635

GRAVY (calculated)

-0.363

Length

136 amino acids

Sequence
(BLAST)

001: MGMSKASYRI WNTIPYRHCD IYFIGGFGTV AWVDVKEYES LHPDKIAVDG GEQYLKELNA IFSKPLKDLL AQESEVDDAA LISIDSKGTD IRVRQGAQFN
101: VQRISFEEGH SVETLEEAKT ALWKLINGGR LHNLQK

Best Arabidopsis Sequence Match ( AT1G51560.1 )
(BLAST)

001: MDAAIFTSVY VCNIPKTKKA FFNPNPPALS SSSCWLCNSQ AKQIIKLRIR EGSNQGLLRV HALFNNEEAS SESEDKNGFG LLPADIFSLP QEKFGSNVSG
101: EKDSENIIDV ETSLAVPHGG GTRAGLFRTP ISGGVQSATS AHGLPRPALA VRNLMEQARF AHLCTVMSKM HHRREGYPFG SLVDFAPDPM GHPIFSFSPL
201: AIHTRNILAE PRCTLVVQIP GWSCLSNARV TLFGDVYPLP EEQQEWAHKQ YMLKHHQGPS QQWGNFHYFR MQNISDIYFI GGFGTVAWIN VNEYETLQPD
301: KIAVDGGEQN LKELNAIFSK PLRELLSSEA ELDDAAIISI DSKGIDIRVR QGAQFKIQRL AFEESHGVET LEEAKSALWK VIEKGKLHNL QK

Arabidopsis Description

Pyridoxamine 5'-phosphate oxidase family protein [Source:UniProtKB/TrEMBL;Acc:Q9C8K8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.