CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 8
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH52586
KRH61926

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51560.1	KRH52586	AT1G22920.1	21798944
AT1G51560.1	KRH61926	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47293	Soybean	nucleus	84.46	85.56
PGSC0003DMT400068172	Potato	cytosol, mitochondrion, peroxisome	26.94	76.47
CDY11726	Canola	cytosol	28.24	75.17
VIT_09s0054g00600.t01	Wine grape	plastid	69.69	67.93
Solyc06g063290.2.1	Tomato	plastid	68.91	65.68
TraesCS7A01G254200.1	Wheat	nucleus, plastid	59.84	64.71
TraesCS7B01G150400.1	Wheat	plastid	59.84	64.71
PGSC0003DMT400068174	Potato	plastid	67.88	64.69
TraesCS7D01G252700.2	Wheat	plastid	59.59	64.43
AT1G51560.1	Thale cress	plastid	65.03	64.03
CDY37313	Canola	plastid	62.44	63.25
CDX82215	Canola	plastid	62.44	63.09
AT3G21140.1	Thale cress	plastid	63.21	63.05
Bra001814.1-P	Field mustard	plastid	62.18	62.83
Os08t0517500-01	Rice	plastid	60.36	62.8
CDY50076	Canola	plastid	63.47	62.66
Bra023902.1-P	Field mustard	plastid	63.21	62.56
CDY32407	Canola	plastid	61.4	62.37
CDY27539	Canola	plastid	63.21	62.09
Bra031254.1-P	Field mustard	plastid	63.21	61.77
CDY19583	Canola	plastid	62.69	61.11
CDY43915	Canola	plastid	61.92	60.81
CDX87825	Canola	plastid	61.92	60.66
Bra030435.1-P	Field mustard	plastid	61.66	60.56
HORVU7Hr1G052520.1	Barley	plastid	60.36	58.69
Os02t0148400-01	Rice	plastid	59.59	58.38
GSMUA_Achr7P19630_001	Banana	plastid	59.84	57.46
GSMUA_AchrUn_...	Banana	plastid	56.99	54.86
Zm00001d037710_P001	Maize	cytosol	17.1	51.97
GSMUA_Achr7P04940_001	Banana	plastid	52.59	51.65
KXG25583	Sorghum	cytosol, mitochondrion	12.18	44.76
KRH06700	Soybean	mitochondrion	18.65	22.09
KRG94835	Soybean	mitochondrion	18.65	22.09

Protein Annotations

EMBL:ACUP02004944	EnsemblPlants:KRH44611	EnsemblPlantsGene:GLYMA_08G221400	Gene3D:2.30.110.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0048037	InterPro:IPR012349	InterPro:Split_barrel_FMN-bd	PANTHER:PTHR13343	PANTHER:PTHR13343:SF16	PFAM:PF13883
ProteinID:KRH44611	ProteinID:KRH44611.1	SEG:seg	SUPFAM:SSF50475	UniParc:UPI00023C5E40	UniProt:I1KVQ4
MapMan:35.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:17977303..17981723

Molecular Weight (calculated)

42710.4 Da

IEP (calculated)

6.631

GRAVY (calculated)

-0.400

Length

386 amino acids

Sequence
(BLAST)

001: MEALSFIIPK DSCSLLLRTP SSYSSSSVRT PPPPLAFFKT TQHSHSPHLL RLRVFALPNP DADEPTNDFA LASHPQENLS HSETESSEDD QDAPPQMDMS
101: WSTITAPAGS GSGGGTRAGL FRTPISGGVQ SATSAHGLPR PALAVRNLME QARFAHLCTV MSRMHHRREG YPFGSLVDFA PDSTGHPIFS FSPLAIHTRN
201: LLADPRCTLV VQIPGWSGLS NARVTLFGDV YPLPEDQQEW AHKQYIAKHQ QGPSQQWGNF YYFRMQNISD IYFIGGFGTV AWVDVKEYET LQPDKIAVDG
301: GEQYLKELNA IFSKPLKKLL SSETEVDDAA LISIDSKGTD IRVRQGAQFN IQRISFDEGQ SVETLEEAKA ALRKLIHKGK VYNLQK

Best Arabidopsis Sequence Match ( AT1G51560.1 )
(BLAST)

001: MDAAIFTSVY VCNIPKTKKA FFNPNPPALS SSSCWLCNSQ AKQIIKLRIR EGSNQGLLRV HALFNNEEAS SESEDKNGFG LLPADIFSLP QEKFGSNVSG
101: EKDSENIIDV ETSLAVPHGG GTRAGLFRTP ISGGVQSATS AHGLPRPALA VRNLMEQARF AHLCTVMSKM HHRREGYPFG SLVDFAPDPM GHPIFSFSPL
201: AIHTRNILAE PRCTLVVQIP GWSCLSNARV TLFGDVYPLP EEQQEWAHKQ YMLKHHQGPS QQWGNFHYFR MQNISDIYFI GGFGTVAWIN VNEYETLQPD
301: KIAVDGGEQN LKELNAIFSK PLRELLSSEA ELDDAAIISI DSKGIDIRVR QGAQFKIQRL AFEESHGVET LEEAKSALWK VIEKGKLHNL QK

Arabidopsis Description

Pyridoxamine 5'-phosphate oxidase family protein [Source:UniProtKB/TrEMBL;Acc:Q9C8K8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.