Factsheet for PGSC0003DMT400068174

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400023896
PGSC0003DMT400069203

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51560.1	PGSC0003DMT400023896	AT1G22920.1	21798944
AT1G51560.1	PGSC0003DMT400069203	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g063290.2.1	Tomato	plastid	98.02	98.02
PGSC0003DMT400068172	Potato	cytosol, mitochondrion, peroxisome	29.63	88.24
CDY11726	Canola	cytosol	26.91	75.17
VIT_09s0054g00600.t01	Wine grape	plastid	70.12	71.72
KRH47293	Soybean	nucleus	64.94	69.03
KRH44611	Soybean	nucleus	64.69	67.88
CDY50076	Canola	plastid	62.47	64.71
AT1G51560.1	Thale cress	plastid	62.47	64.54
CDY32407	Canola	plastid	60.49	64.47
TraesCS7A01G254200.1	Wheat	nucleus, plastid	56.54	64.15
TraesCS7B01G150400.1	Wheat	plastid	56.54	64.15
TraesCS7D01G252700.2	Wheat	plastid	56.3	63.87
Bra001814.1-P	Field mustard	plastid	60.0	63.61
CDY37313	Canola	plastid	59.75	63.52
CDX82215	Canola	plastid	59.75	63.35
Os08t0517500-01	Rice	plastid	58.02	63.34
Bra031254.1-P	Field mustard	plastid	61.73	63.29
CDY27539	Canola	plastid	61.23	63.1
CDY19583	Canola	plastid	61.48	62.88
Bra023902.1-P	Field mustard	plastid	60.49	62.82
CDY43915	Canola	plastid	60.0	61.83
CDX87825	Canola	plastid	60.0	61.68
Bra030435.1-P	Field mustard	plastid	59.75	61.58
AT3G21140.1	Thale cress	plastid	58.27	60.98
HORVU7Hr1G052520.1	Barley	plastid	57.28	58.44
GSMUA_Achr7P19630_001	Banana	plastid	57.04	57.46
Os02t0148400-01	Rice	plastid	55.31	56.85
GSMUA_AchrUn_...	Banana	plastid	54.07	54.61
GSMUA_Achr7P04940_001	Banana	plastid	50.86	52.42
Zm00001d037710_P001	Maize	cytosol	15.31	48.82
KXG25583	Sorghum	cytosol, mitochondrion	11.6	44.76
PGSC0003DMT400083485	Potato	mitochondrion, plastid	16.79	21.18

Protein Annotations

EnsemblPlants:PGSC0003DMT400068174	EnsemblPlantsGene:PGSC0003DMG401026514	EntrezGene:102581125	Gene3D:2.30.110.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0048037	InterPro:IPR012349	InterPro:Split_barrel_FMN-bd	PANTHER:PTHR13343	PANTHER:PTHR13343:SF16	PFAM:PF13883
PGSC:PGSC0003DMG401026514	RefSeq:XP_006357445.1	SEG:seg	SUPFAM:SSF50475	UniParc:UPI000294C69D	UniProt:M1CIK3
MapMan:35.2	:	:	:	:	:

Description

FMN binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG401026514]

Coordinates

chr6:-:48069444..48076025

Molecular Weight (calculated)

44621.5 Da

IEP (calculated)

6.574

GRAVY (calculated)

-0.354

Length

405 amino acids

Sequence
(BLAST)

001: MASSHTLSSS MEAAISSSNR VSIFSETSPV FQSIKPSNRR SICYPKISFS PPSTSSFGGG CSPRLVVSRA ELSGESGCEE EDINGLKNDN AFGLVPESTF
101: SLSQDNLDKQ EINRNDLNQA SKVVSPLEHS TSGGTRAGLF RTPISGGVQS ATSAHGLPKP ALAVRNLMEQ ARFAHLCTVM SRMHHRREGY PFGTLVDFVP
201: DSMGHPLFSF SPLAIHTRNL LADPRCTLVV QIPGWSGLSN ARVTIFGDVY PLPEDQQEWA HKQYIAKHQQ GPSQQWGNFF YFRMQNISDI YFIGGFGTVA
301: WVDVKEYESL HPDKIAVDGG EQYLKELNAI FSKPLKDLLA QESEVDDAAL ISIDSKGTDI RVRQGAQFNV QRISFEEGHS VETLEEAKTA LWKLINGGRL
401: HNLQK

Best Arabidopsis Sequence Match ( AT1G51560.1 )
(BLAST)

001: MDAAIFTSVY VCNIPKTKKA FFNPNPPALS SSSCWLCNSQ AKQIIKLRIR EGSNQGLLRV HALFNNEEAS SESEDKNGFG LLPADIFSLP QEKFGSNVSG
101: EKDSENIIDV ETSLAVPHGG GTRAGLFRTP ISGGVQSATS AHGLPRPALA VRNLMEQARF AHLCTVMSKM HHRREGYPFG SLVDFAPDPM GHPIFSFSPL
201: AIHTRNILAE PRCTLVVQIP GWSCLSNARV TLFGDVYPLP EEQQEWAHKQ YMLKHHQGPS QQWGNFHYFR MQNISDIYFI GGFGTVAWIN VNEYETLQPD
301: KIAVDGGEQN LKELNAIFSK PLRELLSSEA ELDDAAIISI DSKGIDIRVR QGAQFKIQRL AFEESHGVET LEEAKSALWK VIEKGKLHNL QK

Arabidopsis Description

Pyridoxamine 5'-phosphate oxidase family protein [Source:UniProtKB/TrEMBL;Acc:Q9C8K8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.