Factsheet for TraesCS7D01G252700.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G504600.1
TraesCS2D01G505300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51560.1	TraesCS2A01G504600.1	AT1G22920.1	21798944
AT1G51560.1	TraesCS2D01G505300.1	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G150400.1	Wheat	plastid	98.88	98.88
TraesCS7A01G254200.1	Wheat	nucleus, plastid	98.6	98.6
KXG25584	Sorghum	plastid	80.11	78.79
Os08t0517500-01	Rice	plastid	81.51	78.44
Zm00001d031540_P002	Maize	plastid	76.47	75.21
HORVU7Hr1G052520.1	Barley	plastid	80.39	72.29
CDY11726	Canola	cytosol	27.45	67.59
PGSC0003DMT400068172	Potato	cytosol, mitochondrion, peroxisome	23.25	61.03
KRH47293	Soybean	nucleus	64.99	60.89
KRH44611	Soybean	nucleus	64.43	59.59
CDX82215	Canola	plastid	62.75	58.64
CDY32407	Canola	plastid	62.18	58.42
CDY37313	Canola	plastid	62.18	58.27
VIT_09s0054g00600.t01	Wine grape	plastid	64.43	58.08
Bra001814.1-P	Field mustard	plastid	61.9	57.85
AT3G21140.1	Thale cress	plastid	62.47	57.62
Bra031254.1-P	Field mustard	plastid	63.59	57.47
Bra023902.1-P	Field mustard	plastid	62.75	57.44
AT1G51560.1	Thale cress	plastid	63.03	57.4
CDY19583	Canola	plastid	63.59	57.32
CDY50076	Canola	plastid	62.75	57.29
CDY27539	Canola	plastid	63.03	57.25
Solyc06g063290.2.1	Tomato	plastid	64.43	56.79
CDY43915	Canola	plastid	62.47	56.74
PGSC0003DMT400068174	Potato	plastid	63.87	56.3
Bra030435.1-P	Field mustard	plastid	61.9	56.23
GSMUA_AchrUn_...	Banana	plastid	62.75	55.86
CDX87825	Canola	plastid	61.06	55.33
GSMUA_Achr7P04940_001	Banana	plastid	57.42	52.16
TraesCS2D01G202700.1	Wheat	plastid	17.09	17.78

Protein Annotations

EnsemblPlants:TraesCS7D01G252700.2	EnsemblPlantsGene:TraesCS7D01G252700	Gene3D:2.30.110.10	Gene3D:3.20.180.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0048037	InterPro:Haem_oxidase_HugZ-like_sf	InterPro:IPR012349	InterPro:IPR037119	InterPro:Split_barrel_FMN-bd	PANTHER:PTHR13343
PANTHER:PTHR13343:SF16	PFAM:PF13883	SEG:seg	SUPFAM:SSF50475	MapMan:35.2	:

Description

No Description!

Coordinates

chr7D:+:228010375..228013111

Molecular Weight (calculated)

38558.8 Da

IEP (calculated)

9.458

GRAVY (calculated)

-0.275

Length

357 amino acids

Sequence
(BLAST)

001: MEALAGAAAS SALLPAFPAH QPHSRVALRA RPCGPIRAAG GGGGKDDAAK PNGTPVVKSK VDPSQNGALG PVATDKSRTT SSTNSTPDSS GSRAGLFRTP
101: ISGGVQSATF AHGLPPPALA VRNLMEQARF AHLCTVMSGM HHRRAGYPFG SLVDFANDSM GHPIFSLSPL AIHTRNLLSD PRCTLVVQVP GWSGLSNARV
201: TIFGDVYPLS AEQQEWAHKQ YVAKHQQWAS QQWGNFYYYR MQNISDIYFI GGFGTVAWVD VKQYETIQPD KIAVDGGEQS LKELNAIFSK PLREFMSAEG
301: EVDDAALISV DSKGIDIRVR QGAQFNIQRL AFDVPYKVET LEEAKRALHK IIKTSSK

Best Arabidopsis Sequence Match ( AT3G21140.1 )
(BLAST)

001: MEALFTSTHT PNLQTKPLLK SPLPTSSQSS CWFCNSLPKT QFPKLRLSNG SSHGLRIQAL LRNETPSEGE DNNGFGFFPG DIFSLSQEKL GSNSNGETSH
101: SVIDVEASLA HPQGGGGNRA GLFRTPISGG VQNATSAHAL PRPALAVRNL LEQARFAHLC TVMSKMHHRR EGYPFGSLVD FAPDRMGHPI FLFSPLAIHT
201: RNLLNEPRCS LVVQIPGWSG LSNARVTLFG DVYPLSEDEQ EWAHKQYIAK HPHGPSEQWG NFHYFRMQNI SDIYFIGGFG TVAWVDVKEY EGLQPDKIAV
301: DGGERNLKEL NAIFSKPLRE LLSTESEVDD AALISIDSKG IDVRVRQGAQ FNIQRLAFEE GHGVETLEEA KSALWKVLEK VKLNLQK

Arabidopsis Description

Pyridoxamine 5'-phosphate oxidase family protein [Source:UniProtKB/TrEMBL;Acc:Q8L637]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.