CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82215	Canola	plastid	94.21	93.72
CDY50076	Canola	plastid	84.47	82.1
CDY11726	Canola	cytosol	30.79	80.69
CDY19583	Canola	plastid	82.11	78.79
CDY27539	Canola	plastid	80.79	78.12
CDY37313	Canola	plastid	77.89	77.69
AT3G21140.1	Thale cress	plastid	78.42	77.0
PGSC0003DMT400068172	Potato	cytosol, mitochondrion, peroxisome	25.26	70.59
CDY43915	Canola	plastid	71.58	69.21
CDX87825	Canola	plastid	70.79	68.27
VIT_09s0054g00600.t01	Wine grape	plastid	67.11	64.39
KRH47293	Soybean	nucleus	64.21	64.04
TraesCS7D01G252700.2	Wheat	plastid	58.42	62.18
TraesCS7B01G150400.1	Wheat	plastid	58.42	62.18
TraesCS7A01G254200.1	Wheat	nucleus, plastid	58.42	62.18
KRH44611	Soybean	nucleus	62.37	61.4
Os08t0517500-01	Rice	plastid	59.74	61.19
Solyc06g063290.2.1	Tomato	plastid	64.74	60.74
PGSC0003DMT400068174	Potato	plastid	64.47	60.49
GSMUA_Achr7P19630_001	Banana	plastid	58.95	55.72
HORVU7Hr1G052520.1	Barley	plastid	56.84	54.41
GSMUA_AchrUn_...	Banana	plastid	55.26	52.37
Os02t0148400-01	Rice	plastid	53.95	52.03
Zm00001d037710_P001	Maize	cytosol	16.58	49.61
GSMUA_Achr7P04940_001	Banana	plastid	51.05	49.36
KXG25583	Sorghum	cytosol, mitochondrion	11.58	41.9
CDY64899	Canola	plastid	19.74	23.29
CDY50859	Canola	plastid	19.47	23.05

Protein Annotations

EnsemblPlants:CDY32407	EnsemblPlantsGene:GSBRNA2T00051996001	Gene3D:2.30.110.10	GO:A0A078H4I9	GO:GO:0003674	GO:GO:0005488
GO:GO:0048037	InterPro:IPR012349	InterPro:Split_barrel_FMN-bd	PANTHER:PTHR13343	PANTHER:PTHR13343:SF16	PFAM:PF13883
ProteinID:CDY32407	ProteinID:CDY32407.1	SEG:seg	SUPFAM:SSF50475	UniParc:UPI0004EDCCCA	UniPathway:UPA00647
UniProt:A0A078H4I9	MapMan:35.2	:	:	:	:

Description

BnaC03g41910DBnaC03g41910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H4I9]

Coordinates

chrLK032294:-:169671..171894

Molecular Weight (calculated)

42074.1 Da

IEP (calculated)

6.574

GRAVY (calculated)

-0.244

Length

380 amino acids

Sequence
(BLAST)

001: MEALSTSAYI SNLPETKPVF KSSLASSQSS CWLCSSPAKR IPKMRDGSSH GLRIQALLHN ETPSEGGDNL GKSSEFNFFP GDIFSLSLEK LESVIDVETS
101: LALPQGAGGN RAGLFRTPIS GGVQNATSAH ALPRPALAVR NLLEQARFAH LCTMMSKMHH RREGYPFGSL VDFAPDRLGH PIFLLSPLAI HTRNLLAEPR
201: CSLVVQMPGW SCLSNARVTL FGDVYPLSED EQEWAHKQYI AKHQHGTSEQ CGNFRYFRMH NISDIYFIGG FGTVAWVDIK EYEALQPDKI AVDGGEQNLK
301: ELNAIFSKPL RELLSSESEV DDAALISIDS KGIDVRVRQG AEFNIQRLAF EEGHGVETLE EAKAALWKVI EKVKLYYLPK

Best Arabidopsis Sequence Match ( AT3G21140.1 )
(BLAST)

001: MEALFTSTHT PNLQTKPLLK SPLPTSSQSS CWFCNSLPKT QFPKLRLSNG SSHGLRIQAL LRNETPSEGE DNNGFGFFPG DIFSLSQEKL GSNSNGETSH
101: SVIDVEASLA HPQGGGGNRA GLFRTPISGG VQNATSAHAL PRPALAVRNL LEQARFAHLC TVMSKMHHRR EGYPFGSLVD FAPDRMGHPI FLFSPLAIHT
201: RNLLNEPRCS LVVQIPGWSG LSNARVTLFG DVYPLSEDEQ EWAHKQYIAK HPHGPSEQWG NFHYFRMQNI SDIYFIGGFG TVAWVDVKEY EGLQPDKIAV
301: DGGERNLKEL NAIFSKPLRE LLSTESEVDD AALISIDSKG IDVRVRQGAQ FNIQRLAFEE GHGVETLEEA KSALWKVLEK VKLNLQK

Arabidopsis Description

Pyridoxamine 5'-phosphate oxidase family protein [Source:UniProtKB/TrEMBL;Acc:Q8L637]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.