CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19583	Canola	plastid	94.88	93.69
CDY11726	Canola	cytosol	31.46	84.83
CDY32407	Canola	plastid	82.1	84.47
CDX82215	Canola	plastid	80.82	82.72
CDY27539	Canola	plastid	82.1	81.68
CDY37313	Canola	plastid	79.03	81.1
AT3G21140.1	Thale cress	plastid	77.49	78.29
PGSC0003DMT400068172	Potato	cytosol, mitochondrion, peroxisome	24.81	71.32
CDY43915	Canola	plastid	68.8	68.45
CDX87825	Canola	plastid	68.29	67.77
VIT_09s0054g00600.t01	Wine grape	plastid	67.52	66.67
KRH47293	Soybean	nucleus	64.45	66.14
KRH44611	Soybean	nucleus	62.66	63.47
Os08t0517500-01	Rice	plastid	59.85	63.07
TraesCS7B01G150400.1	Wheat	plastid	57.54	63.03
TraesCS7A01G254200.1	Wheat	nucleus, plastid	57.54	63.03
TraesCS7D01G252700.2	Wheat	plastid	57.29	62.75
Solyc06g063290.2.1	Tomato	plastid	64.96	62.72
PGSC0003DMT400068174	Potato	plastid	64.71	62.47
GSMUA_Achr7P19630_001	Banana	plastid	60.87	59.2
HORVU7Hr1G052520.1	Barley	plastid	57.54	56.68
Os02t0148400-01	Rice	plastid	54.73	54.31
GSMUA_AchrUn_...	Banana	plastid	55.5	54.11
Zm00001d037710_P001	Maize	cytosol	16.88	51.97
GSMUA_Achr7P04940_001	Banana	plastid	50.64	50.38
KXG25583	Sorghum	cytosol, mitochondrion	11.76	43.81
CDY50859	Canola	plastid	19.95	24.3
CDY64899	Canola	plastid	19.95	24.22

Protein Annotations

EnsemblPlants:CDY50076	EnsemblPlantsGene:GSBRNA2T00095851001	Gene3D:2.30.110.10	Gene3D:3.20.180.10	GO:A0A078IJC9	GO:GO:0003674
GO:GO:0005488	GO:GO:0048037	InterPro:Haem_oxidase_HugZ-like_sf	InterPro:IPR012349	InterPro:IPR037119	InterPro:Split_barrel_FMN-bd
PANTHER:PTHR13343	PANTHER:PTHR13343:SF16	PFAM:PF13883	ProteinID:CDY50076	ProteinID:CDY50076.1	SEG:seg
SUPFAM:SSF50475	UniParc:UPI0004EDC403	UniPathway:UPA00647	UniProt:A0A078IJC9	MapMan:35.2	:

Description

BnaC05g30850DBnaC05g30850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IJC9]

Coordinates

chrLK032878:+:83890..86487

Molecular Weight (calculated)

43343.3 Da

IEP (calculated)

6.660

GRAVY (calculated)

-0.329

Length

391 amino acids

Sequence
(BLAST)

001: MEALSTSSSY ISNPLPKTKH LFKSSHLPLV ASSQSSYWLC KSPPKLRIRD GSSHGLRIQA LLHNEGEGED NLGESNGFGF FPGDIFSLSQ EKLESETSHS
101: VIDVESSLAL PQGAGNSGGN RGGLFRTPIS GGVQNATSAH ALPRPALAVR NLLEQARFAH LCTVMSKMHH RREGYPFGSL VDFAPDRMGH PIFLFSPLAI
201: HTRNLLAEPR CSLVVQQIPG WSGLSNARVT LFGDVYPLSE DEQEWAHKQY IAKHPHGLSE QWGNFHYFRM QNISDIYFIG GFGTVAWVDV KEYEALQPDK
301: IAVDGGEHNL KELNAIFSKP LRELLSSESE VDDAALISID SKGIDVRVRQ GAQFNIQRLP FEEGHGVETL EEAKAALWKV IEKVKLNYFQ K

Best Arabidopsis Sequence Match ( AT3G21140.1 )
(BLAST)

001: MEALFTSTHT PNLQTKPLLK SPLPTSSQSS CWFCNSLPKT QFPKLRLSNG SSHGLRIQAL LRNETPSEGE DNNGFGFFPG DIFSLSQEKL GSNSNGETSH
101: SVIDVEASLA HPQGGGGNRA GLFRTPISGG VQNATSAHAL PRPALAVRNL LEQARFAHLC TVMSKMHHRR EGYPFGSLVD FAPDRMGHPI FLFSPLAIHT
201: RNLLNEPRCS LVVQIPGWSG LSNARVTLFG DVYPLSEDEQ EWAHKQYIAK HPHGPSEQWG NFHYFRMQNI SDIYFIGGFG TVAWVDVKEY EGLQPDKIAV
301: DGGERNLKEL NAIFSKPLRE LLSTESEVDD AALISIDSKG IDVRVRQGAQ FNIQRLAFEE GHGVETLEEA KSALWKVLEK VKLNLQK

Arabidopsis Description

Pyridoxamine 5'-phosphate oxidase family protein [Source:UniProtKB/TrEMBL;Acc:Q8L637]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.