Factsheet for Solyc06g063290.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

plastid: 20363867

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g073150.2.1
Solyc11g017300.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51560.1	Solyc06g073150.2.1	AT1G22920.1	21798944
AT1G51560.1	Solyc11g017300.1.1	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400068174	Potato	plastid	98.02	98.02
PGSC0003DMT400068172	Potato	cytosol, mitochondrion, peroxisome	29.14	86.76
CDY11726	Canola	cytosol	26.67	74.48
VIT_09s0054g00600.t01	Wine grape	plastid	70.62	72.22
KRH47293	Soybean	nucleus	65.68	69.82
KRH44611	Soybean	nucleus	65.68	68.91
AT1G51560.1	Thale cress	plastid	62.96	65.05
CDY50076	Canola	plastid	62.72	64.96
CDY32407	Canola	plastid	60.74	64.74
TraesCS7A01G254200.1	Wheat	nucleus, plastid	57.04	64.71
TraesCS7B01G150400.1	Wheat	plastid	57.04	64.71
TraesCS7D01G252700.2	Wheat	plastid	56.79	64.43
Bra001814.1-P	Field mustard	plastid	60.74	64.4
CDX82215	Canola	plastid	60.49	64.14
Bra031254.1-P	Field mustard	plastid	62.47	64.05
CDY37313	Canola	plastid	60.25	64.04
CDY27539	Canola	plastid	61.73	63.61
Os08t0517500-01	Rice	plastid	58.27	63.61
CDY19583	Canola	plastid	61.98	63.38
Bra023902.1-P	Field mustard	plastid	60.99	63.33
CDY43915	Canola	plastid	60.25	62.09
CDX87825	Canola	plastid	60.25	61.93
Bra030435.1-P	Field mustard	plastid	60.0	61.83
AT3G21140.1	Thale cress	plastid	58.77	61.5
HORVU7Hr1G052520.1	Barley	plastid	57.53	58.69
GSMUA_Achr7P19630_001	Banana	plastid	57.53	57.96
Os02t0148400-01	Rice	plastid	55.56	57.11
GSMUA_AchrUn_...	Banana	plastid	55.06	55.61
GSMUA_Achr7P04940_001	Banana	plastid	51.6	53.18
Zm00001d037710_P001	Maize	cytosol	15.31	48.82
KXG25583	Sorghum	cytosol, mitochondrion	11.85	45.71
Solyc03g063240.2.1	Tomato	plastid	17.53	22.12

Protein Annotations

EnsemblPlants:Solyc06g063290.2.1	EnsemblPlantsGene:Solyc06g063290.2	Gene3D:2.30.110.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0048037
InterPro:IPR012349	InterPro:Split_barrel_FMN-bd	PANTHER:PTHR13343	PANTHER:PTHR13343:SF16	PFAM:PF13883	SEG:seg
SUPFAM:SSF50475	UniParc:UPI0002766D16	UniProt:K4C760	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr6:+:39995229..40001588

Molecular Weight (calculated)

44593.5 Da

IEP (calculated)

6.702

GRAVY (calculated)

-0.373

Length

405 amino acids

Sequence
(BLAST)

001: MASSHTLSSS MEAAISSSNR VSRFSETPPV FQSIKPSNRR SICYPKISFS PPSTSSFGGG CSPRLVVSRA ELSGESGCEE EDINGLKCDN AFGLVPESTF
101: SLSQDNSDKQ EINRNDLNQA SKVVSPLEHS TSGGTRAGLF RTPISGGVQS ATSAHGLPKP ALAVRNLMEQ ARFAHLCTVM SRMHHRREGY PFGTLVDFAP
201: DSMGHPIFSF SPLAIHTRNL LADPRCTLVV QIPGWSGLSN ARVTIFGDVY PLPEDQQEWA HKQYIAKHQQ GPSQQWGNFF YFRMQNISDI YFIGGFGTVA
301: WVDVKEYESL HPDKIAVDGG EQYLKELNAI FSKPLKDLLA QETEVDDAAL ISIDSKGTDI RVRQGAQFNV QRISFEEGHS VETLEEAKAA LWKLINGGRL
401: HNLQK

Best Arabidopsis Sequence Match ( AT1G51560.1 )
(BLAST)

001: MDAAIFTSVY VCNIPKTKKA FFNPNPPALS SSSCWLCNSQ AKQIIKLRIR EGSNQGLLRV HALFNNEEAS SESEDKNGFG LLPADIFSLP QEKFGSNVSG
101: EKDSENIIDV ETSLAVPHGG GTRAGLFRTP ISGGVQSATS AHGLPRPALA VRNLMEQARF AHLCTVMSKM HHRREGYPFG SLVDFAPDPM GHPIFSFSPL
201: AIHTRNILAE PRCTLVVQIP GWSCLSNARV TLFGDVYPLP EEQQEWAHKQ YMLKHHQGPS QQWGNFHYFR MQNISDIYFI GGFGTVAWIN VNEYETLQPD
301: KIAVDGGEQN LKELNAIFSK PLRELLSSEA ELDDAAIISI DSKGIDIRVR QGAQFKIQRL AFEESHGVET LEEAKSALWK VIEKGKLHNL QK

Arabidopsis Description

Pyridoxamine 5'-phosphate oxidase family protein [Source:UniProtKB/TrEMBL;Acc:Q9C8K8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.