Factsheet for Solyc03g063240.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400083485	Potato	mitochondrion, plastid	95.95	95.95
HORVU2Hr1G037680.2	Barley	cytosol	55.45	68.2
VIT_08s0007g07350.t01	Wine grape	cytosol	57.63	67.03
KRH06700	Soybean	mitochondrion	62.31	61.35
KRG94835	Soybean	mitochondrion	62.31	61.35
AT3G03890.1	Thale cress	plastid	60.12	60.12
Bra031966.1-P	Field mustard	plastid	59.5	59.5
CDY50859	Canola	plastid	59.5	59.5
CDY64899	Canola	plastid	58.26	58.07
Os07t0573800-02	Rice	plastid	58.88	55.26
GSMUA_Achr5P14810_001	Banana	plastid	57.32	55.26
EER99589	Sorghum	plastid	57.94	54.39
TraesCS2A01G184900.1	Wheat	unclear	57.01	53.67
TraesCS2B01G222400.2	Wheat	plastid	57.32	53.64
TraesCS2D01G202700.1	Wheat	plastid	57.01	53.35
Zm00001d021881_P001	Maize	plastid	44.24	49.82
Solyc06g063290.2.1	Tomato	plastid	22.12	17.53

Protein Annotations

Gene3D:2.30.110.10	Gene3D:3.20.180.10	MapMan:35.2	InterPro:DUF2470	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536
GO:GO:0048037	InterPro:Haem_oxidase_HugZ-like_sf	InterPro:IPR012349	InterPro:IPR037119	UniProt:K4BH71	PFAM:PF10615
PFAM:PF13883	PANTHER:PTHR13343	PANTHER:PTHR13343:SF4	SUPFAM:SSF50475	EnsemblPlantsGene:Solyc03g063240.2	EnsemblPlants:Solyc03g063240.2.1
InterPro:Split_barrel_FMN-bd	UniParc:UPI0002767640	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3:-:33811995..33821134

Molecular Weight (calculated)

35811.9 Da

IEP (calculated)

7.070

GRAVY (calculated)

-0.095

Length

321 amino acids

Sequence
(BLAST)

001: MKTLVLAPSP LRTFSPFSSF LYSNLNNNAT HNYLLSPSPS KSFSSLTSTS PLLAMASQNV SSGDEVDIFQ LIQAHQEKAA RLSPIEDVRT LLHYSLRGVL
101: STFSQKYEGY PSASMVDFAC DTYGSPILAV SNLAVHTKDL LATSRCSLLV ARDPEDRTDL VITVHGDAVP VPEIEKEGIR ATYLARHPTA FWVDFGDFHF
201: MRIEPRIVRY VVGVATAILG SGEFSKEEFR TAKVDPIYQF SRPITSHMNK DHMEDTKLIV QHATSVPVDF AYMLDIDSLG FNVKACYKDT DLKLRVPFPR
301: RAVDRKDVKA LIVEMLQAAR T

Best Arabidopsis Sequence Match ( AT3G03890.1 )
(BLAST)

001: MKSLVAHFST PLITARLVPR CIIHRASISA VSFSTVRRRF SPLTMASAAQ SSSQAVSYGS GNSDTDVFKL IQAHEEKAAR LSPVEEIRTV LNGSICGMLS
101: TFSQKYEGYP SGSMVDFACD ADGSPILAVS SLAVHTKDLL ANPKCSLLIA RDPEDRTGLR ITLHGDAVLV SEKDQAAVRS AYLAKHPKAF WVDFGDFSFM
201: RIEPKVVRYV SGVATAFLGS GEFSKEEYQA AKVDPIAQYA KPVTSHMNKD HEEDTKAIVH NITSIPVESA LMLDLDSLGF NVKATLQGNT FKLRVPFPRR
301: AQDRKDVKTL IVEMLQAAKS N

Arabidopsis Description

AT3G03890 protein [Source:UniProtKB/TrEMBL;Acc:Q8LDU1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.