Factsheet for Os07t0573800-02

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 17189339

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G037680.2	Barley	cytosol	70.18	91.95
TraesCS2A01G184900.1	Wheat	unclear	79.82	80.06
EER99589	Sorghum	plastid	78.66	78.66
TraesCS2D01G202700.1	Wheat	plastid	78.66	78.43
TraesCS2B01G222400.2	Wheat	plastid	77.49	77.26
Zm00001d021881_P001	Maize	plastid	59.06	70.88
VIT_08s0007g07350.t01	Wine grape	cytosol	52.34	64.86
GSMUA_Achr5P14810_001	Banana	plastid	62.57	64.26
KRH06700	Soybean	mitochondrion	56.43	59.2
PGSC0003DMT400083485	Potato	mitochondrion, plastid	55.56	59.19
KRG94835	Soybean	mitochondrion	56.14	58.9
Solyc03g063240.2.1	Tomato	plastid	55.26	58.88
Bra031966.1-P	Field mustard	plastid	53.8	57.32
CDY50859	Canola	plastid	53.22	56.7
AT3G03890.1	Thale cress	plastid	53.22	56.7
CDY64899	Canola	plastid	53.22	56.52
Os08t0517500-01	Rice	plastid	20.18	18.6
Os02t0148400-01	Rice	plastid	20.76	18.02

Protein Annotations

KEGG:00750+1.4.3.5	Gene3D:2.30.110.10	Gene3D:3.20.180.10	MapMan:35.2	EntrezGene:4343688	EMBL:AK072835
EMBL:AK104154	ProteinID:BAC83155.1	ProteinID:BAD30223.1	ProteinID:BAF21984.1	ProteinID:BAT02264.1	InterPro:DUF2470
ProteinID:EEE67453.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	GO:GO:0048037	InterPro:Haem_oxidase_HugZ-like_sf	InterPro:IPR012349
InterPro:IPR037119	EnsemblPlantsGene:Os07g0573800	EnsemblPlants:Os07t0573800-02	PFAM:PF01243	PFAM:PF10615	PANTHER:PTHR13343
PANTHER:PTHR13343:SF4	InterPro:Pyridox_Oxase_put	UniProt:Q6ZL16	SUPFAM:SSF50475	InterPro:Split_barrel_FMN-bd	UniParc:UPI00001BF219
RefSeq:XP_015647708.1	SEG:seg	:	:	:	:

Description

Similar to root border cell-specific protein. (Os07t0573800-01);FMN-binding split barrel domain containing protein. (Os07t0573800-02);FMN-binding split barrel domain containing protein. (Os07t0573800-03);Hypothetical protein. (Os07t0573800-04)

Coordinates

chr7:-:23194229..23199001

Molecular Weight (calculated)

36919.8 Da

IEP (calculated)

8.999

GRAVY (calculated)

-0.244

Length

342 amino acids

Sequence
(BLAST)

001: MKPLLLTPAA RLAAAAPSTL SRLLRLQSGR HHAHASSSSN RLLPPLLRPP RDGFRGGRLI ASSSSSSSQM AAPADAPGGS ADAFEVIRAH QEKAARLPPV
101: EEIRTILDQS VRGVLATHSQ GHVGYPSGSM VDFACDQDGS PILAVSSLAI HSKNLSENPK CSLLVAKDPE DRTDTVITVY GDATPVSDQE KDAVRSAYLR
201: RHPEAFWVDF GDFRFLHIKP KAVRYVSGVA TAILGSGEFS AAEFKEAKVD PISQFSTPIT SHMNKDHSDD TKLIVQYSTT VKVDFAYMLD VDSLGFNVKA
301: GYDGSVLKLR IPFPRRAQDR KDVKTLIVEM LQAAKASSSS AE

Best Arabidopsis Sequence Match ( AT3G03890.1 )
(BLAST)

001: MKSLVAHFST PLITARLVPR CIIHRASISA VSFSTVRRRF SPLTMASAAQ SSSQAVSYGS GNSDTDVFKL IQAHEEKAAR LSPVEEIRTV LNGSICGMLS
101: TFSQKYEGYP SGSMVDFACD ADGSPILAVS SLAVHTKDLL ANPKCSLLIA RDPEDRTGLR ITLHGDAVLV SEKDQAAVRS AYLAKHPKAF WVDFGDFSFM
201: RIEPKVVRYV SGVATAFLGS GEFSKEEYQA AKVDPIAQYA KPVTSHMNKD HEEDTKAIVH NITSIPVESA LMLDLDSLGF NVKATLQGNT FKLRVPFPRR
301: AQDRKDVKTL IVEMLQAAKS N

Arabidopsis Description

AT3G03890 protein [Source:UniProtKB/TrEMBL;Acc:Q8LDU1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.