Factsheet for TraesCS2A01G184900.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G037680.2	Barley	cytosol	75.66	98.85
TraesCS2D01G202700.1	Wheat	plastid	96.48	95.92
TraesCS2B01G222400.2	Wheat	plastid	92.96	92.42
Os07t0573800-02	Rice	plastid	80.06	79.82
EER99589	Sorghum	plastid	74.78	74.56
Zm00001d021881_P001	Maize	plastid	57.48	68.77
VIT_08s0007g07350.t01	Wine grape	cytosol	52.49	64.86
GSMUA_Achr5P14810_001	Banana	plastid	61.29	62.76
KRH06700	Soybean	mitochondrion	56.3	58.9
KRG94835	Soybean	mitochondrion	55.72	58.28
PGSC0003DMT400083485	Potato	mitochondrion, plastid	54.25	57.63
Solyc03g063240.2.1	Tomato	plastid	53.67	57.01
Bra031966.1-P	Field mustard	plastid	52.2	55.45
CDY50859	Canola	plastid	51.61	54.83
AT3G03890.1	Thale cress	plastid	51.32	54.52
CDY64899	Canola	plastid	51.32	54.35
TraesCS7A01G254200.1	Wheat	nucleus, plastid	17.89	17.09

Protein Annotations

Gene3D:2.30.110.10	Gene3D:3.20.180.10	MapMan:35.2	InterPro:DUF2470	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536
GO:GO:0048037	InterPro:Haem_oxidase_HugZ-like_sf	InterPro:IPR012349	InterPro:IPR037119	PFAM:PF10615	PFAM:PF13883
PANTHER:PTHR13343	PANTHER:PTHR13343:SF4	SUPFAM:SSF50475	InterPro:Split_barrel_FMN-bd	EnsemblPlantsGene:TraesCS2A01G184900	EnsemblPlants:TraesCS2A01G184900.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2A:-:145196401..145201455

Molecular Weight (calculated)

36730.7 Da

IEP (calculated)

9.058

GRAVY (calculated)

-0.223

Length

341 amino acids

Sequence
(BLAST)

001: MRPFLPTPVG AQLASLPSPS TLSRLLRPLH LQNRHAHAIP APTSSSSPLL HPPRRSSGRR GDRFLASSSP SQMAAPADAP GGSADAFEVI RAHQVKAARL
101: PPVEEIRTIL DQSVRGVLAT HSQEHVGYPS GSMVDFACDQ DGSPILAVSS LAVHSKNLAG STKCSLLVAK DPEDRTDTVI TVYGDATPVP DEEKDAVRTA
201: YLRRHPEAFW VDFGDFRFLH IKPKAVRYVS GVATAILGSG EFSAAEFKEA KVDPISQFST PIAGHMNKDH ADDTKLIVQH STSVKVDFAS ILDVDSLGIN
301: VKAGYDGTVL KLRIPFPRRA QDRKDVKTLI VEMLQAAKAS S

Best Arabidopsis Sequence Match ( AT3G03890.1 )
(BLAST)

001: MKSLVAHFST PLITARLVPR CIIHRASISA VSFSTVRRRF SPLTMASAAQ SSSQAVSYGS GNSDTDVFKL IQAHEEKAAR LSPVEEIRTV LNGSICGMLS
101: TFSQKYEGYP SGSMVDFACD ADGSPILAVS SLAVHTKDLL ANPKCSLLIA RDPEDRTGLR ITLHGDAVLV SEKDQAAVRS AYLAKHPKAF WVDFGDFSFM
201: RIEPKVVRYV SGVATAFLGS GEFSKEEYQA AKVDPIAQYA KPVTSHMNKD HEEDTKAIVH NITSIPVESA LMLDLDSLGF NVKATLQGNT FKLRVPFPRR
301: AQDRKDVKTL IVEMLQAAKS N

Arabidopsis Description

AT3G03890 protein [Source:UniProtKB/TrEMBL;Acc:Q8LDU1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.