CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 5
mitochondrion 4
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06700	Soybean	mitochondrion	92.64	92.64
HORVU2Hr1G037680.2	Barley	cytosol	57.06	71.26
VIT_08s0007g07350.t01	Wine grape	cytosol	60.12	71.01
CDY50859	Canola	plastid	63.19	64.17
AT3G03890.1	Thale cress	plastid	63.19	64.17
Bra031966.1-P	Field mustard	plastid	62.88	63.86
PGSC0003DMT400083485	Potato	mitochondrion, plastid	62.88	63.86
CDY64899	Canola	plastid	62.88	63.66
Solyc03g063240.2.1	Tomato	plastid	61.35	62.31
GSMUA_Achr5P14810_001	Banana	plastid	61.66	60.36
Os07t0573800-02	Rice	plastid	58.9	56.14
EER99589	Sorghum	plastid	58.59	55.85
TraesCS2A01G184900.1	Wheat	unclear	58.28	55.72
TraesCS2B01G222400.2	Wheat	plastid	58.28	55.39
TraesCS2D01G202700.1	Wheat	plastid	58.28	55.39
Zm00001d021881_P001	Maize	plastid	45.4	51.93
KRH44611	Soybean	nucleus	22.09	18.65
KRH47293	Soybean	nucleus	21.78	18.64

Protein Annotations

EntrezGene:100793739	Gene3D:2.30.110.10	Gene3D:3.20.180.10	MapMan:35.2	EMBL:ACUP02012041	EMBL:BT095519
UniProt:C6TD66	InterPro:DUF2470	EnsemblPlantsGene:GLYMA_19G112500	GO:GO:0003674	GO:GO:0005488	GO:GO:0048037
InterPro:Haem_oxidase_HugZ-like_sf	InterPro:IPR012349	InterPro:IPR037119	ProteinID:KRG94834.1	EnsemblPlants:KRG94835	ProteinID:KRG94835
ProteinID:KRG94835.1	PFAM:PF10615	PFAM:PF13883	PANTHER:PTHR13343	PANTHER:PTHR13343:SF4	SUPFAM:SSF50475
InterPro:Split_barrel_FMN-bd	UniParc:UPI0001B16540	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:36659256..36664631

Molecular Weight (calculated)

35920.8 Da

IEP (calculated)

6.797

GRAVY (calculated)

-0.194

Length

326 amino acids

Sequence
(BLAST)

001: MKSMVTPLTR VLPFRHPNGH NTLPFSLTRY PSSPNFSFSP LTLTLSMAAS PQSSAPTVSP GDVNIDKDGV FQLIQAHQEK AARLPPVEEI RTVLDRSVRG
101: MLSTFSKKFD GYPSGSMVDF ACDSNGYPIL AVSDLAVHSK DLTANPKCSL LVARDPEDRT DLVITVHGDA ISVPENEREA VRAAYLARHP NAFWVDFGDF
201: QFLRIEPKVV RFVSGVATAL LGSGEFSGDE YKSAKVDPIA QFSKPVASHM NKDHAEDNKV IVQHWTSVPV DFAFILDLDS LGFNVKAGYQ GDTFKLRVPF
301: PRCAEDRKDV KTLIVEMLQA ARPKVD

Best Arabidopsis Sequence Match ( AT3G03890.1 )
(BLAST)

001: MKSLVAHFST PLITARLVPR CIIHRASISA VSFSTVRRRF SPLTMASAAQ SSSQAVSYGS GNSDTDVFKL IQAHEEKAAR LSPVEEIRTV LNGSICGMLS
101: TFSQKYEGYP SGSMVDFACD ADGSPILAVS SLAVHTKDLL ANPKCSLLIA RDPEDRTGLR ITLHGDAVLV SEKDQAAVRS AYLAKHPKAF WVDFGDFSFM
201: RIEPKVVRYV SGVATAFLGS GEFSKEEYQA AKVDPIAQYA KPVTSHMNKD HEEDTKAIVH NITSIPVESA LMLDLDSLGF NVKATLQGNT FKLRVPFPRR
301: AQDRKDVKTL IVEMLQAAKS N

Arabidopsis Description

AT3G03890 protein [Source:UniProtKB/TrEMBL;Acc:Q8LDU1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.