CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 8
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH52586
KRH61926

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51560.1	KRH52586	AT1G22920.1	21798944
AT1G51560.1	KRH61926	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44611	Soybean	nucleus	85.56	84.46
PGSC0003DMT400068172	Potato	cytosol, mitochondrion, peroxisome	27.3	76.47
CDY11726	Canola	cytosol	27.82	73.1
VIT_09s0054g00600.t01	Wine grape	plastid	71.92	69.19
Solyc06g063290.2.1	Tomato	plastid	69.82	65.68
TraesCS7A01G254200.1	Wheat	nucleus, plastid	61.15	65.27
TraesCS7B01G150400.1	Wheat	plastid	61.15	65.27
TraesCS7D01G252700.2	Wheat	plastid	60.89	64.99
Os08t0517500-01	Rice	plastid	63.25	64.96
PGSC0003DMT400068174	Potato	plastid	69.03	64.94
CDY50076	Canola	plastid	66.14	64.45
AT1G51560.1	Thale cress	plastid	66.14	64.29
CDY32407	Canola	plastid	64.04	64.21
AT3G21140.1	Thale cress	plastid	65.09	64.08
Bra001814.1-P	Field mustard	plastid	64.04	63.87
CDY37313	Canola	plastid	63.78	63.78
CDY27539	Canola	plastid	65.62	63.61
CDX82215	Canola	plastid	63.78	63.61
Bra031254.1-P	Field mustard	plastid	65.88	63.54
Bra023902.1-P	Field mustard	plastid	64.57	63.08
CDY19583	Canola	plastid	65.35	62.88
CDY43915	Canola	plastid	64.04	62.09
CDX87825	Canola	plastid	64.04	61.93
Bra030435.1-P	Field mustard	plastid	63.78	61.83
HORVU7Hr1G052520.1	Barley	plastid	61.68	59.19
GSMUA_Achr7P19630_001	Banana	plastid	61.94	58.71
Os02t0148400-01	Rice	plastid	59.84	57.87
GSMUA_AchrUn_...	Banana	plastid	56.96	54.11
Zm00001d037710_P001	Maize	cytosol	17.32	51.97
GSMUA_Achr7P04940_001	Banana	plastid	52.23	50.64
KXG25583	Sorghum	cytosol, mitochondrion	12.6	45.71
KRG94835	Soybean	mitochondrion	18.64	21.78
KRH06700	Soybean	mitochondrion	18.37	21.47

Protein Annotations

EMBL:ACUP02004144	EnsemblPlants:KRH47293	EnsemblPlantsGene:GLYMA_07G020600	EntrezGene:100785526	Gene3D:2.30.110.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0048037	InterPro:IPR012349	InterPro:Split_barrel_FMN-bd	PANTHER:PTHR13343	PANTHER:PTHR13343:SF16
PFAM:PF13883	ProteinID:KRH47293	ProteinID:KRH47293.1	SEG:seg	SUPFAM:SSF50475	UniParc:UPI0002338227
UniProt:I1KGP8	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:1610560..1615632

Molecular Weight (calculated)

42084.7 Da

IEP (calculated)

6.848

GRAVY (calculated)

-0.390

Length

381 amino acids

Sequence
(BLAST)

001: MEALSFIPKD SCSLLLRPPS SSSVRTAPPL AFFKTTQHSH SHLLRLRVSA LPNTDAADEP TNDFTLASQP LENLSHSETE SSEDDQDAPS QMGMSWSTIT
101: APAGSGSGGG TRAGLFRTPI SGGVQSATSA HGLPRPALAV RNLMEQARFA HLCTVMSRMH HRREGYPFGS LVDFAPDSTG HPIFSFSPLA IHTRNLLADP
201: RCTLVVQIPG WSGLSNARVT IFGDVYPLPE DQQEWAHKQY IAKHQQGPSQ QWGNFYYFRM QNIRDIYFIG GFGTVAWVDV KEYETLQPDK IAVDGGEQYL
301: KELNAIFSKP LKKLLSNETE VDDAALISID SKGTDIRVRQ GAQFNIQRIS FDEGQSVETL EEAKAALRKL IHKGKVYNLQ K

Best Arabidopsis Sequence Match ( AT1G51560.1 )
(BLAST)

001: MDAAIFTSVY VCNIPKTKKA FFNPNPPALS SSSCWLCNSQ AKQIIKLRIR EGSNQGLLRV HALFNNEEAS SESEDKNGFG LLPADIFSLP QEKFGSNVSG
101: EKDSENIIDV ETSLAVPHGG GTRAGLFRTP ISGGVQSATS AHGLPRPALA VRNLMEQARF AHLCTVMSKM HHRREGYPFG SLVDFAPDPM GHPIFSFSPL
201: AIHTRNILAE PRCTLVVQIP GWSCLSNARV TLFGDVYPLP EEQQEWAHKQ YMLKHHQGPS QQWGNFHYFR MQNISDIYFI GGFGTVAWIN VNEYETLQPD
301: KIAVDGGEQN LKELNAIFSK PLRELLSSEA ELDDAAIISI DSKGIDIRVR QGAQFKIQRL AFEESHGVET LEEAKSALWK VIEKGKLHNL QK

Arabidopsis Description

Pyridoxamine 5'-phosphate oxidase family protein [Source:UniProtKB/TrEMBL;Acc:Q9C8K8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.