CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG27287

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51560.1	KXG27287	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG25584	Sorghum	plastid	53.33	15.43
CDY37313	Canola	plastid	48.57	13.39
Bra023902.1-P	Field mustard	plastid	48.57	13.08
CDY27539	Canola	plastid	48.57	12.98
VIT_09s0054g00600.t01	Wine grape	plastid	47.62	12.63
KRH47293	Soybean	nucleus	45.71	12.6
Bra030435.1-P	Field mustard	plastid	45.71	12.21
CDY43915	Canola	plastid	45.71	12.21
KRH44611	Soybean	nucleus	44.76	12.18
CDX87825	Canola	plastid	44.76	11.93
Solyc06g063290.2.1	Tomato	plastid	45.71	11.85
CDY50076	Canola	plastid	43.81	11.76
AT1G51560.1	Thale cress	plastid	43.81	11.73
AT3G21140.1	Thale cress	plastid	42.86	11.63
PGSC0003DMT400068174	Potato	plastid	44.76	11.6
CDY32407	Canola	plastid	41.9	11.58
Bra031254.1-P	Field mustard	plastid	42.86	11.39
CDX82215	Canola	plastid	40.95	11.26
Bra001814.1-P	Field mustard	plastid	40.95	11.26
EES04519	Sorghum	plastid	44.76	11.16
CDY19583	Canola	plastid	41.9	11.11
EER99589	Sorghum	plastid	13.33	4.09
Zm00001d037710_P001	Maize	cytosol	2.86	2.36
CDY11726	Canola	cytosol	2.86	2.07
PGSC0003DMT400068172	Potato	cytosol, mitochondrion, peroxisome	1.9	1.47

Protein Annotations

EnsemblPlants:KXG25583	EnsemblPlantsGene:SORBI_3007G200700	GO:GO:0003674	GO:GO:0005488	GO:GO:0048037	PANTHER:PTHR13343
PANTHER:PTHR13343:SF16	ProteinID:KXG25583	ProteinID:KXG25583.1	UniParc:UPI00081ABC65	UniProt:A0A1B6PIS4	MapMan:35.2

Description

hypothetical protein

Coordinates

chr7:-:63179447..63180917

Molecular Weight (calculated)

12220.8 Da

IEP (calculated)

8.019

GRAVY (calculated)

-0.117

Length

105 amino acids

Sequence
(BLAST)

001: MESCRSQLTS RRRLHLPVLV LTQVDPELAC LEHPYRWCAE CTFAHGLPPP ALAVHNLMEQ ARFAHLFSVM SMHHRHTGYL FGSLVDFANE SMGRELAFYW
101: YRFGK

Best Arabidopsis Sequence Match ( AT1G51560.1 )
(BLAST)

001: MDAAIFTSVY VCNIPKTKKA FFNPNPPALS SSSCWLCNSQ AKQIIKLRIR EGSNQGLLRV HALFNNEEAS SESEDKNGFG LLPADIFSLP QEKFGSNVSG
101: EKDSENIIDV ETSLAVPHGG GTRAGLFRTP ISGGVQSATS AHGLPRPALA VRNLMEQARF AHLCTVMSKM HHRREGYPFG SLVDFAPDPM GHPIFSFSPL
201: AIHTRNILAE PRCTLVVQIP GWSCLSNARV TLFGDVYPLP EEQQEWAHKQ YMLKHHQGPS QQWGNFHYFR MQNISDIYFI GGFGTVAWIN VNEYETLQPD
301: KIAVDGGEQN LKELNAIFSK PLRELLSSEA ELDDAAIISI DSKGIDIRVR QGAQFKIQRL AFEESHGVET LEEAKSALWK VIEKGKLHNL QK

Arabidopsis Description

Pyridoxamine 5'-phosphate oxidase family protein [Source:UniProtKB/TrEMBL;Acc:Q9C8K8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.