Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87825 | Canola | plastid | 82.65 | 82.23 |
| Bra030435.1-P | Field mustard | plastid | 82.4 | 82.19 |
| CDY43915 | Canola | plastid | 82.14 | 81.93 |
| AT3G21140.1 | Thale cress | plastid | 69.9 | 70.8 |
| PGSC0003DMT400068172 | Potato | cytosol, mitochondrion, peroxisome | 24.23 | 69.85 |
| VIT_09s0054g00600.t01 | Wine grape | plastid | 69.64 | 68.94 |
| KRH47293 | Soybean | nucleus | 64.29 | 66.14 |
| KRH44611 | Soybean | nucleus | 64.03 | 65.03 |
| TraesCS7A01G254200.1 | Wheat | nucleus, plastid | 57.65 | 63.31 |
| TraesCS7B01G150400.1 | Wheat | plastid | 57.65 | 63.31 |
| TraesCS7D01G252700.2 | Wheat | plastid | 57.4 | 63.03 |
| Solyc06g063290.2.1 | Tomato | plastid | 65.05 | 62.96 |
| Os08t0517500-01 | Rice | plastid | 59.44 | 62.8 |
| PGSC0003DMT400068174 | Potato | plastid | 64.54 | 62.47 |
| GSMUA_Achr7P19630_001 | Banana | plastid | 59.69 | 58.21 |
| HORVU7Hr1G052520.1 | Barley | plastid | 58.67 | 57.93 |
| Os02t0148400-01 | Rice | plastid | 54.08 | 53.81 |
| GSMUA_AchrUn_... | Banana | plastid | 54.08 | 52.87 |
| Zm00001d037710_P001 | Maize | cytosol | 17.09 | 52.76 |
| GSMUA_Achr7P04940_001 | Banana | plastid | 51.02 | 50.89 |
| KXG25583 | Sorghum | cytosol, mitochondrion | 11.73 | 43.81 |
| AT3G03890.1 | Thale cress | plastid | 16.58 | 20.25 |
Protein Annotations
| Gene3D:2.30.110.10 | Gene3D:3.20.180.10 | MapMan:35.2 | EntrezGene:841581 | UniProt:A0A178WDI8 | ProteinID:AAG52630.1 |
| ProteinID:AEE32683.1 | ArrayExpress:AT1G51560 | EnsemblPlantsGene:AT1G51560 | RefSeq:AT1G51560 | TAIR:AT1G51560 | RefSeq:AT1G51560-TAIR-G |
| EnsemblPlants:AT1G51560.1 | TAIR:AT1G51560.1 | EMBL:AY150443 | Unigene:At.37791 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0048037 | InterPro:Haem_oxidase_HugZ-like_sf | InterPro:IPR012349 | InterPro:IPR037119 | RefSeq:NP_175567.1 | ProteinID:OAP16477.1 |
| PFAM:PF13883 | PO:PO:0000293 | PANTHER:PTHR13343 | PANTHER:PTHR13343:SF16 | UniProt:Q9C8K8 | SUPFAM:SSF50475 |
| InterPro:Split_barrel_FMN-bd | UniParc:UPI00000AC337 | : | : | : | : |
Description
Pyridoxamine 5'-phosphate oxidase family protein [Source:UniProtKB/TrEMBL;Acc:Q9C8K8]
Coordinates
chr1:-:19119606..19122038
Molecular Weight (calculated)
43584.9 Da
IEP (calculated)
6.882
GRAVY (calculated)
-0.301
Length
392 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAAIFTSVY VCNIPKTKKA FFNPNPPALS SSSCWLCNSQ AKQIIKLRIR EGSNQGLLRV HALFNNEEAS SESEDKNGFG LLPADIFSLP QEKFGSNVSG
101: EKDSENIIDV ETSLAVPHGG GTRAGLFRTP ISGGVQSATS AHGLPRPALA VRNLMEQARF AHLCTVMSKM HHRREGYPFG SLVDFAPDPM GHPIFSFSPL
201: AIHTRNILAE PRCTLVVQIP GWSCLSNARV TLFGDVYPLP EEQQEWAHKQ YMLKHHQGPS QQWGNFHYFR MQNISDIYFI GGFGTVAWIN VNEYETLQPD
301: KIAVDGGEQN LKELNAIFSK PLRELLSSEA ELDDAAIISI DSKGIDIRVR QGAQFKIQRL AFEESHGVET LEEAKSALWK VIEKGKLHNL QK
101: EKDSENIIDV ETSLAVPHGG GTRAGLFRTP ISGGVQSATS AHGLPRPALA VRNLMEQARF AHLCTVMSKM HHRREGYPFG SLVDFAPDPM GHPIFSFSPL
201: AIHTRNILAE PRCTLVVQIP GWSCLSNARV TLFGDVYPLP EEQQEWAHKQ YMLKHHQGPS QQWGNFHYFR MQNISDIYFI GGFGTVAWIN VNEYETLQPD
301: KIAVDGGEQN LKELNAIFSK PLRELLSSEA ELDDAAIISI DSKGIDIRVR QGAQFKIQRL AFEESHGVET LEEAKSALWK VIEKGKLHNL QK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.