Factsheet for VIT_09s0054g00600.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g04360.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51560.1	VIT_03s0038g04360.t01	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400068172	Potato	cytosol, mitochondrion, peroxisome	26.01	75.74
CDY11726	Canola	cytosol	26.77	73.1
KRH47293	Soybean	nucleus	69.19	71.92
Solyc06g063290.2.1	Tomato	plastid	72.22	70.62
PGSC0003DMT400068174	Potato	plastid	71.72	70.12
KRH44611	Soybean	nucleus	67.93	69.69
AT1G51560.1	Thale cress	plastid	68.94	69.64
CDY50076	Canola	plastid	66.67	67.52
CDX82215	Canola	plastid	64.9	67.28
CDY32407	Canola	plastid	64.39	67.11
Bra001814.1-P	Field mustard	plastid	64.65	67.02
Bra031254.1-P	Field mustard	plastid	66.41	66.58
CDY37313	Canola	plastid	63.89	66.4
CDY27539	Canola	plastid	65.66	66.16
Bra023902.1-P	Field mustard	plastid	65.15	66.15
CDY19583	Canola	plastid	65.66	65.66
CDY43915	Canola	plastid	64.9	65.39
Bra030435.1-P	Field mustard	plastid	64.9	65.39
TraesCS7B01G150400.1	Wheat	plastid	58.84	65.27
TraesCS7A01G254200.1	Wheat	nucleus, plastid	58.84	65.27
CDX87825	Canola	plastid	64.9	65.23
AT3G21140.1	Thale cress	plastid	63.64	65.12
Os08t0517500-01	Rice	plastid	60.61	64.69
TraesCS7D01G252700.2	Wheat	plastid	58.08	64.43
GSMUA_Achr7P19630_001	Banana	plastid	64.39	63.43
HORVU7Hr1G052520.1	Barley	plastid	59.34	59.19
Os02t0148400-01	Rice	plastid	57.58	57.87
GSMUA_AchrUn_...	Banana	plastid	58.59	57.86
GSMUA_Achr7P04940_001	Banana	plastid	55.56	55.98
Zm00001d037710_P001	Maize	cytosol	16.67	51.97
KXG25583	Sorghum	cytosol, mitochondrion	12.63	47.62
VIT_08s0007g07350.t01	Wine grape	cytosol	16.41	23.55

Protein Annotations

EntrezGene:100253108	wikigene:100253108	Gene3D:2.30.110.10	Gene3D:3.20.180.10	MapMan:35.2	ProteinID:CBI18460
ProteinID:CBI18460.3	UniProt:D7SS28	EMBL:FN594972	GO:GO:0003674	GO:GO:0005488	GO:GO:0048037
InterPro:Haem_oxidase_HugZ-like_sf	InterPro:IPR012349	InterPro:IPR037119	EntrezGene:LOC100253108	wikigene:LOC100253108	PFAM:PF13883
PANTHER:PTHR13343	PANTHER:PTHR13343:SF16	SUPFAM:SSF50475	InterPro:Split_barrel_FMN-bd	TIGR:TC52441	UniParc:UPI00015CA30F
ArrayExpress:VIT_09s0054g00600	EnsemblPlantsGene:VIT_09s0054g00600	EnsemblPlants:VIT_09s0054g00600.t01	unigene:Vvi.2805	RefSeq:XP_002264902	RefSeq:XP_002264902.1
RefSeq:XP_002264942	RefSeq:XP_002264942.1	RefSeq:XP_019077967.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr9:+:21395921..21400945

Molecular Weight (calculated)

43356.4 Da

IEP (calculated)

6.708

GRAVY (calculated)

-0.276

Length

396 amino acids

Sequence
(BLAST)

001: MEALSSSVFV SKFSETRPVF HTPPPSSSSS SSFSCSLVKI SNKRSGSLKI VDTSPSLRLR ALSGDVSGDV EGEDASGFGL ASEESVSSLS QGNLNHNQSP
101: EKGVDEMSKM EMPLTVSHGS ITGGGTRAGL FRTPISGGVQ SATSAHGLPR PALAVRNLME QARFAHLCTV MSRMHHRREG YPFGSLVDFA PDSMGHPIFS
201: FSPLAIHTRN LLADPRCTLV VQIPGWSGLS NARVTIFGDV FPLPEHQQEW AHKQYIAKHL QGPSQQWGNF YYFRMQNISD IYFIGGFGTV AWVDVKEYEA
301: LQPDKIAVDG GEQNLKELNA VFSKPLKELL SMEAEIDDAA LISIDSKGTD IRVRQGAQFN IQRIPFEEGH AVETLEEAKA ALWKLINQGR VYNMQK

Best Arabidopsis Sequence Match ( AT1G51560.1 )
(BLAST)

001: MDAAIFTSVY VCNIPKTKKA FFNPNPPALS SSSCWLCNSQ AKQIIKLRIR EGSNQGLLRV HALFNNEEAS SESEDKNGFG LLPADIFSLP QEKFGSNVSG
101: EKDSENIIDV ETSLAVPHGG GTRAGLFRTP ISGGVQSATS AHGLPRPALA VRNLMEQARF AHLCTVMSKM HHRREGYPFG SLVDFAPDPM GHPIFSFSPL
201: AIHTRNILAE PRCTLVVQIP GWSCLSNARV TLFGDVYPLP EEQQEWAHKQ YMLKHHQGPS QQWGNFHYFR MQNISDIYFI GGFGTVAWIN VNEYETLQPD
301: KIAVDGGEQN LKELNAIFSK PLRELLSSEA ELDDAAIISI DSKGIDIRVR QGAQFKIQRL AFEESHGVET LEEAKSALWK VIEKGKLHNL QK

Arabidopsis Description

Pyridoxamine 5'-phosphate oxidase family protein [Source:UniProtKB/TrEMBL;Acc:Q9C8K8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.