Factsheet for GSMUA_AchrUn_randomP04470_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
peroxisome 1
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51560.1	GSMUA_Achr10P...	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P04940_001	Banana	plastid	71.07	72.52
PGSC0003DMT400068172	Potato	cytosol, mitochondrion, peroxisome	21.7	63.97
CDY11726	Canola	cytosol	22.94	63.45
TraesCS7B01G150400.1	Wheat	plastid	56.11	63.03
TraesCS7A01G254200.1	Wheat	nucleus, plastid	56.11	63.03
TraesCS7D01G252700.2	Wheat	plastid	55.86	62.75
GSMUA_Achr7P19630_001	Banana	plastid	62.09	61.94
Zm00001d031540_P002	Maize	plastid	55.11	60.88
KXG25584	Sorghum	plastid	54.86	60.61
Os08t0517500-01	Rice	plastid	55.86	60.38
VIT_09s0054g00600.t01	Wine grape	plastid	57.86	58.59
KRH44611	Soybean	nucleus	54.86	56.99
KRH47293	Soybean	nucleus	54.11	56.96
CDX82215	Canola	plastid	54.11	56.81
Bra001814.1-P	Field mustard	plastid	54.11	56.81
HORVU7Hr1G052520.1	Barley	plastid	55.36	55.92
CDY37313	Canola	plastid	53.12	55.91
Bra023902.1-P	Field mustard	plastid	54.11	55.64
CDY50076	Canola	plastid	54.11	55.5
CDY27539	Canola	plastid	54.36	55.47
AT3G21140.1	Thale cress	plastid	53.37	55.3
CDY32407	Canola	plastid	52.37	55.26
Bra031254.1-P	Field mustard	plastid	54.36	55.19
Solyc06g063290.2.1	Tomato	plastid	55.61	55.06
CDY19583	Canola	plastid	54.11	54.8
AT1G51560.1	Thale cress	plastid	52.87	54.08
PGSC0003DMT400068174	Potato	plastid	54.61	54.07
CDY43915	Canola	plastid	52.12	53.18
Bra030435.1-P	Field mustard	plastid	51.87	52.93
CDX87825	Canola	plastid	51.87	52.79
GSMUA_Achr5P14810_001	Banana	plastid	18.7	22.52

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP04470_001	EnsemblPlants:GSMUA_AchrUn_randomT04470_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG04470_001	Gene3D:2.30.110.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0048037	InterPro:IPR012349	InterPro:Split_barrel_FMN-bd	PANTHER:PTHR13343	PANTHER:PTHR13343:SF16	PFAM:PF13883
SUPFAM:SSF50475	UniParc:UPI00029614FE	UniProt:M0U6A9	MapMan:35.2	:	:

Description

pyridoxamine 5'-phosphate oxidase family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG04470_001]

Coordinates

chrchrUn_random:+:18212420..18219181

Molecular Weight (calculated)

43730.8 Da

IEP (calculated)

6.790

GRAVY (calculated)

-0.281

Length

401 amino acids

Sequence
(BLAST)

001: MESLCGSGIT SGWIEASVAH LPERLSRVGA PTLRLGLHGD RGKFASLMLW SPPPSPQKWG RRWRVLAHEA SGGCGENNGV PTNGFNVLIN DGRAFPENDS
101: VQDGSHESCI SEKKEMVQPV AVGSGTTGSK AGLFRTPISG GVQSATTVHG LPPPALAVRN LMEQAKFGQL CTIMSGMHHH RAGYPVGSLV DFAPDSMGHP
201: IFSFSPLAIH TRNLLANSKC SLVVQIPGWS SLSNARVTIF GDVFPLAADE QEWARQQFVA KHQQWASQQW GNFYYYRMQN ISDIYFIGGF GTVAWVDVKE
301: YEGLKPDKIA ADSGEQNLKE LNAIFSKPIK DILSTETEID DAAFISVDSK GTDVRVRQGA QFNIQRISFE VEHEVQTLDE AKAALQKIID RSCSSMSQKG
401: N

Best Arabidopsis Sequence Match ( AT3G21140.1 )
(BLAST)

001: MEALFTSTHT PNLQTKPLLK SPLPTSSQSS CWFCNSLPKT QFPKLRLSNG SSHGLRIQAL LRNETPSEGE DNNGFGFFPG DIFSLSQEKL GSNSNGETSH
101: SVIDVEASLA HPQGGGGNRA GLFRTPISGG VQNATSAHAL PRPALAVRNL LEQARFAHLC TVMSKMHHRR EGYPFGSLVD FAPDRMGHPI FLFSPLAIHT
201: RNLLNEPRCS LVVQIPGWSG LSNARVTLFG DVYPLSEDEQ EWAHKQYIAK HPHGPSEQWG NFHYFRMQNI SDIYFIGGFG TVAWVDVKEY EGLQPDKIAV
301: DGGERNLKEL NAIFSKPLRE LLSTESEVDD AALISIDSKG IDVRVRQGAQ FNIQRLAFEE GHGVETLEEA KSALWKVLEK VKLNLQK

Arabidopsis Description

Pyridoxamine 5'-phosphate oxidase family protein [Source:UniProtKB/TrEMBL;Acc:Q8L637]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.