CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400068172	Potato	cytosol, mitochondrion, peroxisome	48.97	52.21
Zm00001d037710_P001	Maize	cytosol	36.55	41.73
CDY50076	Canola	plastid	84.83	31.46
CDY19583	Canola	plastid	84.83	31.06
CDY32407	Canola	plastid	80.69	30.79
AT3G21140.1	Thale cress	plastid	82.07	30.75
CDY37313	Canola	plastid	80.69	30.71
CDX82215	Canola	plastid	80.0	30.37
CDY27539	Canola	plastid	80.69	29.77
KRH44611	Soybean	nucleus	75.17	28.24
KRH47293	Soybean	nucleus	73.1	27.82
Os08t0517500-01	Rice	plastid	71.03	27.76
TraesCS7D01G252700.2	Wheat	plastid	67.59	27.45
TraesCS7B01G150400.1	Wheat	plastid	66.9	27.17
TraesCS7A01G254200.1	Wheat	nucleus, plastid	66.9	27.17
CDY43915	Canola	plastid	73.1	26.97
PGSC0003DMT400068174	Potato	plastid	75.17	26.91
CDX87825	Canola	plastid	73.1	26.9
VIT_09s0054g00600.t01	Wine grape	plastid	73.1	26.77
Solyc06g063290.2.1	Tomato	plastid	74.48	26.67
HORVU7Hr1G052520.1	Barley	plastid	66.9	24.43
Os02t0148400-01	Rice	plastid	64.83	23.86
GSMUA_Achr7P19630_001	Banana	plastid	65.52	23.63
GSMUA_AchrUn_...	Banana	plastid	63.45	22.94
GSMUA_Achr7P04940_001	Banana	plastid	60.0	22.14
CDY50859	Canola	plastid	22.76	10.28
CDY64899	Canola	plastid	22.07	9.94
KXG25583	Sorghum	cytosol, mitochondrion	2.07	2.86

Protein Annotations

EnsemblPlants:CDY11726	EnsemblPlantsGene:GSBRNA2T00049935001	Gene3D:2.30.110.10	GO:A0A078FEN3	GO:GO:0003674	GO:GO:0005488
GO:GO:0048037	InterPro:IPR012349	InterPro:Split_barrel_FMN-bd	PANTHER:PTHR13343	PANTHER:PTHR13343:SF16	PFAM:PF13883
ProteinID:CDY11726	ProteinID:CDY11726.1	SUPFAM:SSF50475	UniParc:UPI0004EE4329	UniPathway:UPA00647	UniProt:A0A078FEN3
MapMan:35.2	:	:	:	:	:

Description

BnaC06g13340DBnaC06g13340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FEN3]

Coordinates

chrLK032013:+:794791..796117

Molecular Weight (calculated)

16704.8 Da

IEP (calculated)

4.497

GRAVY (calculated)

-0.157

Length

145 amino acids

Sequence
(BLAST)

001: MEWPIEARVT LLGDVYPFSE DEQEWAHKQY IAKHPHGLSE QWGNFHYFRM QNISDIYFIG GFGTVAWVDV KEYEALQPDK IAIDGGEHNL KELNAIFSKP
101: LRELLASESE VDDAALISID SKGIDVRVRQ GVVWFLFFDF LAKVL

Best Arabidopsis Sequence Match ( AT1G51560.1 )
(BLAST)

001: MDAAIFTSVY VCNIPKTKKA FFNPNPPALS SSSCWLCNSQ AKQIIKLRIR EGSNQGLLRV HALFNNEEAS SESEDKNGFG LLPADIFSLP QEKFGSNVSG
101: EKDSENIIDV ETSLAVPHGG GTRAGLFRTP ISGGVQSATS AHGLPRPALA VRNLMEQARF AHLCTVMSKM HHRREGYPFG SLVDFAPDPM GHPIFSFSPL
201: AIHTRNILAE PRCTLVVQIP GWSCLSNARV TLFGDVYPLP EEQQEWAHKQ YMLKHHQGPS QQWGNFHYFR MQNISDIYFI GGFGTVAWIN VNEYETLQPD
301: KIAVDGGEQN LKELNAIFSK PLRELLSSEA ELDDAAIISI DSKGIDIRVR QGAQFKIQRL AFEESHGVET LEEAKSALWK VIEKGKLHNL QK

Arabidopsis Description

Pyridoxamine 5'-phosphate oxidase family protein [Source:UniProtKB/TrEMBL;Acc:Q9C8K8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.