Factsheet for GSMUA_Achr7P04940_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51560.1	GSMUA_Achr10P...	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	plastid	72.52	71.07
PGSC0003DMT400068172	Potato	cytosol, mitochondrion, peroxisome	21.88	63.24
CDY11726	Canola	cytosol	22.14	60.0
GSMUA_Achr7P19630_001	Banana	plastid	59.8	58.46
TraesCS7D01G252700.2	Wheat	plastid	52.16	57.42
TraesCS7B01G150400.1	Wheat	plastid	51.91	57.14
TraesCS7A01G254200.1	Wheat	nucleus, plastid	51.91	57.14
Os08t0517500-01	Rice	plastid	53.69	56.87
KXG25584	Sorghum	plastid	51.65	55.92
VIT_09s0054g00600.t01	Wine grape	plastid	55.98	55.56
Zm00001d031540_P002	Maize	plastid	50.64	54.82
Bra001814.1-P	Field mustard	plastid	51.4	52.88
CDX82215	Canola	plastid	51.15	52.62
KRH44611	Soybean	nucleus	51.65	52.59
KRH47293	Soybean	nucleus	50.64	52.23
HORVU7Hr1G052520.1	Barley	plastid	52.67	52.14
AT3G21140.1	Thale cress	plastid	51.15	51.94
Solyc06g063290.2.1	Tomato	plastid	53.18	51.6
CDY32407	Canola	plastid	49.36	51.05
AT1G51560.1	Thale cress	plastid	50.89	51.02
CDY37313	Canola	plastid	49.36	50.92
CDY27539	Canola	plastid	50.89	50.89
PGSC0003DMT400068174	Potato	plastid	52.42	50.86
Bra023902.1-P	Field mustard	plastid	50.38	50.77
CDY50076	Canola	plastid	50.38	50.64
CDX87825	Canola	plastid	50.13	50.0
Bra031254.1-P	Field mustard	plastid	50.13	49.87
CDY19583	Canola	plastid	50.13	49.75
CDY43915	Canola	plastid	49.62	49.62
Bra030435.1-P	Field mustard	plastid	49.62	49.62
GSMUA_Achr5P14810_001	Banana	plastid	18.07	21.32

Protein Annotations

EnsemblPlants:GSMUA_Achr7P04940_001	EnsemblPlants:GSMUA_Achr7T04940_001	EnsemblPlantsGene:GSMUA_Achr7G04940_001	Gene3D:2.30.110.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0048037	InterPro:IPR012349	InterPro:Split_barrel_FMN-bd	ncoils:Coil	PANTHER:PTHR13343	PANTHER:PTHR13343:SF16
PFAM:PF13883	SUPFAM:SSF50475	UniParc:UPI000295ED4D	UniProt:M0TET4	MapMan:35.2	:

Description

Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr7G04940_001]

Coordinates

chr7:+:3707309..3712256

Molecular Weight (calculated)

42743.7 Da

IEP (calculated)

7.499

GRAVY (calculated)

-0.206

Length

393 amino acids

Sequence
(BLAST)

001: MESLCSSAVT PWRIEAPVVQ PKCSSLVKAS TFRFWRGNCP EKLASLALSG PPRSPQSRGG RWRVLAHGAS GIGGEDSGAL TNGFSVLIDG DPASIQNDII
101: QNGGYEDCMS GNMEMVTPVT AGSVTTASKA GLFRTPISGG VQSALAVNNL PHPALAVHNL MQQAKYGQLC TIVSRMHNRR EGYPFGSLVD FAPDPMGHPI
201: FSLSPLAIHT RNLLVNSKCS LVVQIPGWTS LSNARATIFG DVFPLAADQQ EWACQQFAAK HQQWASKQLG NLYYYRMQNI SGIYFIGGFG TVAWVDVKEY
301: EASKPDKIAA DSGEQNLKEL NAIFSKSLKD SLSTEAEIDD AAFISIDSKG TDIRVRQGAQ FNVQRISFEV EHDVQTLDDA KAALEKIINR YRR

Best Arabidopsis Sequence Match ( AT3G21140.1 )
(BLAST)

001: MEALFTSTHT PNLQTKPLLK SPLPTSSQSS CWFCNSLPKT QFPKLRLSNG SSHGLRIQAL LRNETPSEGE DNNGFGFFPG DIFSLSQEKL GSNSNGETSH
101: SVIDVEASLA HPQGGGGNRA GLFRTPISGG VQNATSAHAL PRPALAVRNL LEQARFAHLC TVMSKMHHRR EGYPFGSLVD FAPDRMGHPI FLFSPLAIHT
201: RNLLNEPRCS LVVQIPGWSG LSNARVTLFG DVYPLSEDEQ EWAHKQYIAK HPHGPSEQWG NFHYFRMQNI SDIYFIGGFG TVAWVDVKEY EGLQPDKIAV
301: DGGERNLKEL NAIFSKPLRE LLSTESEVDD AALISIDSKG IDVRVRQGAQ FNIQRLAFEE GHGVETLEEA KSALWKVLEK VKLNLQK

Arabidopsis Description

Pyridoxamine 5'-phosphate oxidase family protein [Source:UniProtKB/TrEMBL;Acc:Q8L637]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.