CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY04768
CDY21400
CDY25761

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51560.1	CDY04768	AT1G22920.1	21798944
AT1G51560.1	CDY21400	AT1G22920.1	21798944
AT1G51560.1	CDY25761	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030435.1-P	Field mustard	plastid	97.2	97.2
CDX87825	Canola	plastid	93.38	93.15
AT1G51560.1	Thale cress	plastid	81.93	82.14
CDY11726	Canola	cytosol	26.97	73.1
CDY32407	Canola	plastid	69.21	71.58
CDY27539	Canola	plastid	71.5	71.5
CDX82215	Canola	plastid	68.7	70.68
CDY37313	Canola	plastid	67.68	69.82
CDY50076	Canola	plastid	68.45	68.8
CDY19583	Canola	plastid	68.7	68.18
PGSC0003DMT400068172	Potato	cytosol, mitochondrion, peroxisome	22.9	66.18
VIT_09s0054g00600.t01	Wine grape	plastid	65.39	64.9
KRH47293	Soybean	nucleus	62.09	64.04
Os08t0517500-01	Rice	plastid	60.31	63.88
TraesCS7B01G150400.1	Wheat	plastid	57.25	63.03
TraesCS7A01G254200.1	Wheat	nucleus, plastid	57.25	63.03
TraesCS7D01G252700.2	Wheat	plastid	56.74	62.47
KRH44611	Soybean	nucleus	60.81	61.92
Solyc06g063290.2.1	Tomato	plastid	62.09	60.25
PGSC0003DMT400068174	Potato	plastid	61.83	60.0
GSMUA_Achr7P19630_001	Banana	plastid	59.03	57.71
HORVU7Hr1G052520.1	Barley	plastid	56.23	55.67
Os02t0148400-01	Rice	plastid	54.45	54.31
Zm00001d037710_P001	Maize	cytosol	17.05	52.76
GSMUA_AchrUn_...	Banana	plastid	53.18	52.12
GSMUA_Achr7P04940_001	Banana	plastid	49.62	49.62
KXG25583	Sorghum	cytosol, mitochondrion	12.21	45.71
CDY64899	Canola	plastid	17.81	21.74
CDY50859	Canola	plastid	17.56	21.5

Protein Annotations

EnsemblPlants:CDY43915	EnsemblPlantsGene:GSBRNA2T00077504001	Gene3D:2.30.110.10	Gene3D:3.20.180.10	GO:A0A078HZ77	GO:GO:0003674
GO:GO:0005488	GO:GO:0048037	InterPro:Haem_oxidase_HugZ-like_sf	InterPro:IPR012349	InterPro:IPR037119	InterPro:Split_barrel_FMN-bd
PANTHER:PTHR13343	PANTHER:PTHR13343:SF16	PFAM:PF13883	ProteinID:CDY43915	ProteinID:CDY43915.1	SEG:seg
SUPFAM:SSF50475	UniParc:UPI0004EE28E5	UniPathway:UPA00647	UniProt:A0A078HZ77	MapMan:35.2	:

Description

BnaA05g15250DBnaA05g15250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HZ77]

Coordinates

chrLK032573:-:117776..119838

Molecular Weight (calculated)

43387.5 Da

IEP (calculated)

6.993

GRAVY (calculated)

-0.336

Length

393 amino acids

Sequence
(BLAST)

001: MEATVFTSLY VSNLPKPKAI FNLNPRALSS SSCWLCNSQS KGNTKLRPNG SNHGVLRLHA LFQNEEAPSE SDYNLAENKG FGLLPADIFS LSPEKVESSL
101: SGQKESHKII DVETSLALPP HGGGTHAGLF RTPISGGVQN ATSAHGLPPP ALAVRNLMEQ ARFAHLCTVM SKMHHRREGY PFGSLVDFAP DPMGHPIFSF
201: SPLAIHTRNI LAEPRCTLVV QIPGWNCLSN ARATLFGDVY PLPENEQEWA HKQYMAKHHQ GPSQQWGNFH YFRMHNISDI YFIGGFGTVA WINVNEYEAL
301: QPDKIAADGG EQNLKELNAI FSKPLRELLS TESEVDDAAI ISVDSKGIDI RVRQGAKFNI QRLAFEESLG VETLEEAKSA LRKVIEKGKT HNL

Best Arabidopsis Sequence Match ( AT1G51560.1 )
(BLAST)

001: MDAAIFTSVY VCNIPKTKKA FFNPNPPALS SSSCWLCNSQ AKQIIKLRIR EGSNQGLLRV HALFNNEEAS SESEDKNGFG LLPADIFSLP QEKFGSNVSG
101: EKDSENIIDV ETSLAVPHGG GTRAGLFRTP ISGGVQSATS AHGLPRPALA VRNLMEQARF AHLCTVMSKM HHRREGYPFG SLVDFAPDPM GHPIFSFSPL
201: AIHTRNILAE PRCTLVVQIP GWSCLSNARV TLFGDVYPLP EEQQEWAHKQ YMLKHHQGPS QQWGNFHYFR MQNISDIYFI GGFGTVAWIN VNEYETLQPD
301: KIAVDGGEQN LKELNAIFSK PLRELLSSEA ELDDAAIISI DSKGIDIRVR QGAQFKIQRL AFEESHGVET LEEAKSALWK VIEKGKLHNL QK

Arabidopsis Description

Pyridoxamine 5'-phosphate oxidase family protein [Source:UniProtKB/TrEMBL;Acc:Q9C8K8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.