CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY04768
CDY21400
CDY25761

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51560.1	CDY04768	AT1G22920.1	21798944
AT1G51560.1	CDY21400	AT1G22920.1	21798944
AT1G51560.1	CDY25761	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43915	Canola	plastid	93.15	93.38
AT1G51560.1	Thale cress	plastid	82.23	82.65
CDY11726	Canola	cytosol	26.9	73.1
CDY32407	Canola	plastid	68.27	70.79
CDY27539	Canola	plastid	70.3	70.48
CDX82215	Canola	plastid	68.27	70.42
CDY37313	Canola	plastid	67.26	69.55
CDY50076	Canola	plastid	67.77	68.29
CDY19583	Canola	plastid	68.02	67.68
PGSC0003DMT400068172	Potato	cytosol, mitochondrion, peroxisome	22.84	66.18
VIT_09s0054g00600.t01	Wine grape	plastid	65.23	64.9
KRH47293	Soybean	nucleus	61.93	64.04
Os08t0517500-01	Rice	plastid	59.64	63.34
KRH44611	Soybean	nucleus	60.66	61.92
TraesCS7B01G150400.1	Wheat	plastid	55.84	61.62
TraesCS7A01G254200.1	Wheat	nucleus, plastid	55.84	61.62
TraesCS7D01G252700.2	Wheat	plastid	55.33	61.06
Solyc06g063290.2.1	Tomato	plastid	61.93	60.25
PGSC0003DMT400068174	Potato	plastid	61.68	60.0
GSMUA_Achr7P19630_001	Banana	plastid	58.63	57.46
HORVU7Hr1G052520.1	Barley	plastid	56.6	56.17
Os02t0148400-01	Rice	plastid	53.81	53.81
Zm00001d037710_P001	Maize	cytosol	17.01	52.76
GSMUA_AchrUn_...	Banana	plastid	52.79	51.87
GSMUA_Achr7P04940_001	Banana	plastid	50.0	50.13
KXG25583	Sorghum	cytosol, mitochondrion	11.93	44.76
CDY64899	Canola	plastid	18.02	22.05
CDY50859	Canola	plastid	17.77	21.81

Protein Annotations

EnsemblPlants:CDX87825	EnsemblPlantsGene:GSBRNA2T00146982001	Gene3D:2.30.110.10	Gene3D:3.20.180.10	GO:A0A078DF11	GO:GO:0003674
GO:GO:0005488	GO:GO:0048037	InterPro:Haem_oxidase_HugZ-like_sf	InterPro:IPR012349	InterPro:IPR037119	InterPro:Split_barrel_FMN-bd
PANTHER:PTHR13343	PANTHER:PTHR13343:SF16	PFAM:PF13883	ProteinID:CDX87825	ProteinID:CDX87825.1	SEG:seg
SUPFAM:SSF50475	UniParc:UPI0004EDEBC6	UniPathway:UPA00647	MapMan:35.2	:	:

Description

BnaC06g08870D

Coordinates

chrLK031852:-:375267..377341

Molecular Weight (calculated)

43567.7 Da

IEP (calculated)

6.960

GRAVY (calculated)

-0.310

Length

394 amino acids

Sequence
(BLAST)

001: MEATTVFTSL YVSNLPKPKA IFNLTPPDLS SSSCWLCNSQ SKRITKLRLN ESNHGVLRLH ALFHNEEAPS QSDDNLAGNN GFGLLPADMF SLSQEKVGSS
101: LSGEKESHKI IDVETSLAFP PHGGGTRAAL FRTPISGGVQ NATSAHGLPP PALAVRNLME QARFAHLCTV MSKMHHRREG YPFGSLVDFA PDPVGHPIFS
201: FSPLAIHTRN ILAEPRCTLV VQIPGWNCLS NARATLFGDV YRLPENEQEW AHKQYMAKHH QGPSQQWGNF HYFRMQNISD IYFIGGFGTV AWINVNEYEA
301: LQPDKIAADG GEQNLKELNA IFSKPLRELL STESEVDDAA IISVDSKGID IRVRQGAKFN IQRLAFEESL GVETLEDAKS ALRKVIEKGK VHNL

Best Arabidopsis Sequence Match ( AT1G51560.1 )
(BLAST)

001: MDAAIFTSVY VCNIPKTKKA FFNPNPPALS SSSCWLCNSQ AKQIIKLRIR EGSNQGLLRV HALFNNEEAS SESEDKNGFG LLPADIFSLP QEKFGSNVSG
101: EKDSENIIDV ETSLAVPHGG GTRAGLFRTP ISGGVQSATS AHGLPRPALA VRNLMEQARF AHLCTVMSKM HHRREGYPFG SLVDFAPDPM GHPIFSFSPL
201: AIHTRNILAE PRCTLVVQIP GWSCLSNARV TLFGDVYPLP EEQQEWAHKQ YMLKHHQGPS QQWGNFHYFR MQNISDIYFI GGFGTVAWIN VNEYETLQPD
301: KIAVDGGEQN LKELNAIFSK PLRELLSSEA ELDDAAIISI DSKGIDIRVR QGAQFKIQRL AFEESHGVET LEEAKSALWK VIEKGKLHNL QK

Arabidopsis Description

Pyridoxamine 5'-phosphate oxidase family protein [Source:UniProtKB/TrEMBL;Acc:Q9C8K8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.