Factsheet for Zm00001d037710_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
extracellular 2
golgi 2
plasma membrane 2
endoplasmic reticulum 2
vacuole 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002027_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51560.1	Zm00001d002027_P002	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400068172	Potato	cytosol, mitochondrion, peroxisome	44.09	41.18
CDY11726	Canola	cytosol	41.73	36.55
Zm00001d015274_P001	Maize	plastid	61.42	19.65
Zm00001d031540_P002	Maize	plastid	51.97	18.18
CDY37313	Canola	plastid	52.76	17.59
KRH47293	Soybean	nucleus	51.97	17.32
AT3G21140.1	Thale cress	plastid	52.76	17.31
CDY27539	Canola	plastid	53.54	17.3
Bra023902.1-P	Field mustard	plastid	52.76	17.18
KRH44611	Soybean	nucleus	51.97	17.1
AT1G51560.1	Thale cress	plastid	52.76	17.09
CDY43915	Canola	plastid	52.76	17.05
Bra001814.1-P	Field mustard	plastid	51.18	17.02
CDX82215	Canola	plastid	51.18	17.02
CDX87825	Canola	plastid	52.76	17.01
CDY50076	Canola	plastid	51.97	16.88
Bra031254.1-P	Field mustard	plastid	51.97	16.71
CDY19583	Canola	plastid	51.97	16.67
VIT_09s0054g00600.t01	Wine grape	plastid	51.97	16.67
CDY32407	Canola	plastid	49.61	16.58
Bra030435.1-P	Field mustard	plastid	51.18	16.54
PGSC0003DMT400068174	Potato	plastid	48.82	15.31
Solyc06g063290.2.1	Tomato	plastid	48.82	15.31
Zm00001d021881_P001	Maize	plastid	11.02	4.91
KXG25583	Sorghum	cytosol, mitochondrion	2.36	2.86

Protein Annotations

EnsemblPlants:Zm00001d037710_P001	EnsemblPlants:Zm00001d037710_T001	EnsemblPlantsGene:Zm00001d037710	PANTHER:PTHR13343	PANTHER:PTHR13343:SF20	ProteinID:AQK84641.1
UniParc:UPI0008423522	UniProt:A0A1D6M000	MapMan:35.2	:	:	:

Description

Pyridoxamine 5'-phosphate oxidase family protein

Coordinates

chr6:-:134664172..134665749

Molecular Weight (calculated)

13917.6 Da

IEP (calculated)

4.298

GRAVY (calculated)

-0.224

Length

127 amino acids

Sequence
(BLAST)

001: MEETKTDMVV VVVLMAQRTS LLSNRYMSFG TVAWVDVNEY ETLQPDKIAM DGGEQNLKEL NSMFSKPVKE HLSTDEGEVD DLAVISMDSK GIDIRVQQGA
101: QVQLSEKGAG ALTTLAKVST IMTSEKS

Best Arabidopsis Sequence Match ( AT1G51560.1 )
(BLAST)

001: MDAAIFTSVY VCNIPKTKKA FFNPNPPALS SSSCWLCNSQ AKQIIKLRIR EGSNQGLLRV HALFNNEEAS SESEDKNGFG LLPADIFSLP QEKFGSNVSG
101: EKDSENIIDV ETSLAVPHGG GTRAGLFRTP ISGGVQSATS AHGLPRPALA VRNLMEQARF AHLCTVMSKM HHRREGYPFG SLVDFAPDPM GHPIFSFSPL
201: AIHTRNILAE PRCTLVVQIP GWSCLSNARV TLFGDVYPLP EEQQEWAHKQ YMLKHHQGPS QQWGNFHYFR MQNISDIYFI GGFGTVAWIN VNEYETLQPD
301: KIAVDGGEQN LKELNAIFSK PLRELLSSEA ELDDAAIISI DSKGIDIRVR QGAQFKIQRL AFEESHGVET LEEAKSALWK VIEKGKLHNL QK

Arabidopsis Description

Pyridoxamine 5'-phosphate oxidase family protein [Source:UniProtKB/TrEMBL;Acc:Q9C8K8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.