Factsheet for Bra030435.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012351.1-P
Bra024548.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51560.1	Bra012351.1-P	AT1G22920.1	21798944
AT1G51560.1	Bra024548.1-P	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43915	Canola	plastid	97.2	97.2
AT1G51560.1	Thale cress	plastid	82.19	82.4
Bra001814.1-P	Field mustard	plastid	68.96	70.94
Bra023902.1-P	Field mustard	plastid	69.21	69.74
Bra031254.1-P	Field mustard	plastid	68.19	67.85
VIT_09s0054g00600.t01	Wine grape	plastid	65.39	64.9
PGSC0003DMT400068172	Potato	cytosol, mitochondrion, peroxisome	22.39	64.71
KRH47293	Soybean	nucleus	61.83	63.78
Os08t0517500-01	Rice	plastid	59.8	63.34
TraesCS7A01G254200.1	Wheat	nucleus, plastid	56.74	62.47
TraesCS7B01G150400.1	Wheat	plastid	56.74	62.47
TraesCS7D01G252700.2	Wheat	plastid	56.23	61.9
KRH44611	Soybean	nucleus	60.56	61.66
Solyc06g063290.2.1	Tomato	plastid	61.83	60.0
PGSC0003DMT400068174	Potato	plastid	61.58	59.75
GSMUA_Achr7P19630_001	Banana	plastid	59.29	57.96
HORVU7Hr1G052520.1	Barley	plastid	57.0	56.42
Os02t0148400-01	Rice	plastid	54.2	54.06
GSMUA_AchrUn_...	Banana	plastid	52.93	51.87
Zm00001d037710_P001	Maize	cytosol	16.54	51.18
GSMUA_Achr7P04940_001	Banana	plastid	49.62	49.62
KXG25583	Sorghum	cytosol, mitochondrion	12.21	45.71
Bra031966.1-P	Field mustard	plastid	17.05	20.87

Protein Annotations

EnsemblPlants:Bra030435.1	EnsemblPlants:Bra030435.1-P	EnsemblPlantsGene:Bra030435	Gene3D:2.30.110.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0048037	InterPro:IPR012349	InterPro:Split_barrel_FMN-bd	PANTHER:PTHR13343	PANTHER:PTHR13343:SF16	PFAM:PF13883
SEG:seg	SUPFAM:SSF50475	UniParc:UPI00025479EA	UniProt:M4ENR5	MapMan:35.2	:

Description

AT1G51560 (E=4e-179) | FMN binding

Coordinates

chrA05:+:11180485..11182408

Molecular Weight (calculated)

43282.3 Da

IEP (calculated)

6.904

GRAVY (calculated)

-0.331

Length

393 amino acids

Sequence
(BLAST)

001: MEATVFTSLY VSNLPKPKAI FNLNPSALSS SSCWLCNSQS KGNTKLRLNG SNHGVLRLHA LFQNEEAPSE SDDNLAENKG FGHLPADIFS LSQEKVGSSL
101: SGEKESHKII DVETSLALPP HGGGTRAGLF RTPISGGVQN ATSAHGLPPP ALAVRNLMEQ ARFAHLCTVM SKMHHRREGY PFGSLVDFAP DPMGHPIFSF
201: SPLAIHTRNI LAEPRCTLVV QIPGWNCLSN ARATLFGDVY PLPENEQEWA HKQYMAKHHQ GPSQQWGNFH YFRMHNISDI YFIGGFGTVA WINVNEYEAL
301: QPDKIAADGG EQNLKELNAI FSKPLRELLS TESEVDDAAI ISVDSKGIDI RLRHGAKFNI QRLAFEESLG VETLEEAKSA LRKVIEKGKA HNL

Best Arabidopsis Sequence Match ( AT1G51560.1 )
(BLAST)

001: MDAAIFTSVY VCNIPKTKKA FFNPNPPALS SSSCWLCNSQ AKQIIKLRIR EGSNQGLLRV HALFNNEEAS SESEDKNGFG LLPADIFSLP QEKFGSNVSG
101: EKDSENIIDV ETSLAVPHGG GTRAGLFRTP ISGGVQSATS AHGLPRPALA VRNLMEQARF AHLCTVMSKM HHRREGYPFG SLVDFAPDPM GHPIFSFSPL
201: AIHTRNILAE PRCTLVVQIP GWSCLSNARV TLFGDVYPLP EEQQEWAHKQ YMLKHHQGPS QQWGNFHYFR MQNISDIYFI GGFGTVAWIN VNEYETLQPD
301: KIAVDGGEQN LKELNAIFSK PLRELLSSEA ELDDAAIISI DSKGIDIRVR QGAQFKIQRL AFEESHGVET LEEAKSALWK VIEKGKLHNL QK

Arabidopsis Description

Pyridoxamine 5'-phosphate oxidase family protein [Source:UniProtKB/TrEMBL;Acc:Q9C8K8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.