Factsheet for GSMUA_Achr7P19630_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51560.1	GSMUA_Achr10P...	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11726	Canola	cytosol	23.63	65.52
PGSC0003DMT400068172	Potato	cytosol, mitochondrion, peroxisome	21.89	64.71
VIT_09s0054g00600.t01	Wine grape	plastid	63.43	64.39
GSMUA_AchrUn_...	Banana	plastid	61.94	62.09
KRH47293	Soybean	nucleus	58.71	61.94
CDY50076	Canola	plastid	59.2	60.87
Os02t0148400-01	Rice	plastid	59.45	60.66
KRH44611	Soybean	nucleus	57.46	59.84
CDY37313	Canola	plastid	56.72	59.84
GSMUA_Achr7P04940_001	Banana	plastid	58.46	59.8
CDY27539	Canola	plastid	58.46	59.8
Bra031254.1-P	Field mustard	plastid	58.71	59.75
Bra023902.1-P	Field mustard	plastid	57.96	59.74
AT1G51560.1	Thale cress	plastid	58.21	59.69
CDX82215	Canola	plastid	56.72	59.69
CDY19583	Canola	plastid	58.71	59.6
Zm00001d015274_P001	Maize	plastid	58.71	59.45
AT3G21140.1	Thale cress	plastid	57.21	59.43
Bra001814.1-P	Field mustard	plastid	56.47	59.42
Bra030435.1-P	Field mustard	plastid	57.96	59.29
CDY43915	Canola	plastid	57.71	59.03
CDY32407	Canola	plastid	55.72	58.95
CDX87825	Canola	plastid	57.46	58.63
Solyc06g063290.2.1	Tomato	plastid	57.96	57.53
PGSC0003DMT400068174	Potato	plastid	57.46	57.04
EES04519	Sorghum	plastid	57.71	55.11
GSMUA_Achr5P14810_001	Banana	plastid	17.16	20.72

Protein Annotations

EnsemblPlants:GSMUA_Achr7P19630_001	EnsemblPlants:GSMUA_Achr7T19630_001	EnsemblPlantsGene:GSMUA_Achr7G19630_001	Gene3D:2.30.110.10	Gene3D:3.20.180.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0048037	InterPro:Haem_oxidase_HugZ-like_sf	InterPro:IPR012349	InterPro:IPR037119	InterPro:Split_barrel_FMN-bd
ncoils:Coil	PANTHER:PTHR13343	PANTHER:PTHR13343:SF16	PFAM:PF13883	SEG:seg	SUPFAM:SSF50475
UniParc:UPI00029565FE	UniProt:M0TJ00	MapMan:35.2	:	:	:

Description

pyridoxamine 5'-phosphate oxidase family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G19630_001]

Coordinates

chr7:-:22578589..22586438

Molecular Weight (calculated)

44109.5 Da

IEP (calculated)

7.307

GRAVY (calculated)

-0.299

Length

402 amino acids

Sequence
(BLAST)

001: METLSNTILP SGLAETCPPR QYPVSLFFKV SPFRRGILRT QENPYVLRLS ICQSDALKCS PRLRALAGDV SGNSEGGDEA VGRGSGFLPA EGGPLIERDL
101: DLGGSHEMGV SENLDMVRPI AGGSGSSGSR SGLFRTPISG GVQTATSTHD LPSPALAVRN LMEQARFAHL CTVMSQMHHR RAGYPFGSLV DFAPDSMGHP
201: IFSLSPLAIH TRNLLADPRC TLVVQIPGWS GLSNARVTIF GDIVPLPADQ QEWARQQYMA KHQQWSSHQW GNFYYYRMQS ISDIYFIGGF GTVAWVNVKE
301: YEATQPDKIA ADGGEQNLKE LNANFSKPLK ELLSMEAEID DAALISIDSK GIDIRVRQGA QFNIQRLSFE VEHSIETLEE AKRALQKIIK GYKSNRGRLG
401: KS

Best Arabidopsis Sequence Match ( AT1G51560.1 )
(BLAST)

001: MDAAIFTSVY VCNIPKTKKA FFNPNPPALS SSSCWLCNSQ AKQIIKLRIR EGSNQGLLRV HALFNNEEAS SESEDKNGFG LLPADIFSLP QEKFGSNVSG
101: EKDSENIIDV ETSLAVPHGG GTRAGLFRTP ISGGVQSATS AHGLPRPALA VRNLMEQARF AHLCTVMSKM HHRREGYPFG SLVDFAPDPM GHPIFSFSPL
201: AIHTRNILAE PRCTLVVQIP GWSCLSNARV TLFGDVYPLP EEQQEWAHKQ YMLKHHQGPS QQWGNFHYFR MQNISDIYFI GGFGTVAWIN VNEYETLQPD
301: KIAVDGGEQN LKELNAIFSK PLRELLSSEA ELDDAAIISI DSKGIDIRVR QGAQFKIQRL AFEESHGVET LEEAKSALWK VIEKGKLHNL QK

Arabidopsis Description

Pyridoxamine 5'-phosphate oxidase family protein [Source:UniProtKB/TrEMBL;Acc:Q9C8K8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.