CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, golgi, mitochondrion, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015274_P001	Maize	plastid	78.86	83.63
KXG25584	Sorghum	plastid	55.34	64.19
Os02t0148400-01	Rice	plastid	59.62	63.71
GSMUA_Achr7P19630_001	Banana	plastid	55.11	57.71
KXG25583	Sorghum	cytosol, mitochondrion	11.16	44.76
EER99589	Sorghum	plastid	14.73	18.13

Protein Annotations

EnsemblPlants:EES04519	EnsemblPlantsGene:SORBI_3004G040600	Gene3D:2.30.110.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0048037
InterPro:IPR012349	InterPro:Split_barrel_FMN-bd	ncoils:Coil	PANTHER:PTHR13343	PANTHER:PTHR13343:SF20	PFAM:PF13883
ProteinID:EES04519	ProteinID:EES04519.2	SEG:seg	SUPFAM:SSF50475	unigene:Sbi.1089	UniParc:UPI0007F2580A
UniProt:C5XUN4	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:3343129..3347709

Molecular Weight (calculated)

46196.6 Da

IEP (calculated)

6.560

GRAVY (calculated)

-0.260

Length

421 amino acids

Sequence
(BLAST)

001: MAQIITDRYR FHPSLSLSLL HSTLFFTLME ALGARSSVLS SPGTAGDASP SLSLPLRRAS AAFPGLRRSP SALAISTRWL RAPPRIGGRL LAGAGEDGSL
101: DPADDTTDQA GDFQLLESNV TLRGSNDMDT TKHDDAGTSG SGGTNTGGSR AGLFRTPISG GVHSATAVHD LPPPALAVRN LMEQARFAHL CTVMSRMHHR
201: REGYPFGSLV DFAPDPFGHP IFSLSPLAIH TRNLLADPRC TLVVQVPGWS GLSNARVTIF GDVIPLPVEQ QEWAHQQYVS KHQQWASQQW GNFYYYRMHT
301: ISDIYFIGGF GTVAWIDVNE YEALQPDKIA MDGGEHNLKE LNSMFSKPLR ELLSTDEGEV DDVAVISMDS KGIDIRVRHG AQFNIQRIAF EVDHSVETLD
401: EATEALRRII SKSRWHTRAQ L

Best Arabidopsis Sequence Match ( AT1G51560.1 )
(BLAST)

001: MDAAIFTSVY VCNIPKTKKA FFNPNPPALS SSSCWLCNSQ AKQIIKLRIR EGSNQGLLRV HALFNNEEAS SESEDKNGFG LLPADIFSLP QEKFGSNVSG
101: EKDSENIIDV ETSLAVPHGG GTRAGLFRTP ISGGVQSATS AHGLPRPALA VRNLMEQARF AHLCTVMSKM HHRREGYPFG SLVDFAPDPM GHPIFSFSPL
201: AIHTRNILAE PRCTLVVQIP GWSCLSNARV TLFGDVYPLP EEQQEWAHKQ YMLKHHQGPS QQWGNFHYFR MQNISDIYFI GGFGTVAWIN VNEYETLQPD
301: KIAVDGGEQN LKELNAIFSK PLRELLSSEA ELDDAAIISI DSKGIDIRVR QGAQFKIQRL AFEESHGVET LEEAKSALWK VIEKGKLHNL QK

Arabidopsis Description

Pyridoxamine 5'-phosphate oxidase family protein [Source:UniProtKB/TrEMBL;Acc:Q9C8K8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.