Skip to main content
crop-pal logo
Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 10
  • nucleus 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d031540_P002 Maize plastid 87.33 87.33
TraesCS7B01G150400.1 Wheat plastid 79.34 80.67
TraesCS7A01G254200.1 Wheat nucleus, plastid 79.06 80.39
TraesCS7D01G252700.2 Wheat plastid 78.79 80.11
Os08t0517500-01 Rice plastid 74.1 72.51
HORVU7Hr1G052520.1 Barley plastid 71.9 65.74
EES04519 Sorghum plastid 64.19 55.34
GSMUA_AchrUn_... Banana plastid 60.61 54.86
KXG25583 Sorghum cytosol, mitochondrion 15.43 53.33
GSMUA_Achr7P04940_001 Banana plastid 55.92 51.65
EER99589 Sorghum plastid 17.08 18.13
Protein Annotations
EnsemblPlants:KXG25584EnsemblPlantsGene:SORBI_3007G200900Gene3D:2.30.110.10Gene3D:3.20.180.10GO:GO:0003674GO:GO:0005488
GO:GO:0048037InterPro:Haem_oxidase_HugZ-like_sfInterPro:IPR012349InterPro:IPR037119InterPro:Split_barrel_FMN-bdPANTHER:PTHR13343
PANTHER:PTHR13343:SF16PFAM:PF13883ProteinID:KXG25584ProteinID:KXG25584.1SEG:segSUPFAM:SSF50475
UniParc:UPI0001C80DB9UniProt:A0A1B6PIR7MapMan:35.2:::
Description
hypothetical protein
Coordinates
chr7:-:63199546..63202849
Molecular Weight (calculated)
39262.7 Da
IEP (calculated)
9.484
GRAVY (calculated)
-0.262
Length
363 amino acids
Sequence
(BLAST)
001: MEALAGSASS SILPARHPPS RVAAQSLALR PSRCGPLRAA GAGGGKDDAQ TAPAANGSPV LKLRSNSSQN GVLPITADKS QKASSTSVST DSSGSRAGLF
101: RTPISGGVQS ATFAHGLPPP ALAVRNLMEQ ARFAHLCSVM SGMHHRRTGY PFGSLVDFAN DSMGHPIFSL SPLAIHTRNL LADPRCTLVV QVPGWSGLSN
201: ARVTIFGDVY PLPAEQQEWA HKQYVAKHQQ WASQQWGNFY YYRMHNISDI YFIGGFGTVA WIDVKEYETI QPDKIAVDGG DLQSLKELNA IFSKPLREVL
301: SSEGEVDDAA LISVDSKGID IRVRQGAQFN IQRLAFDVPH KVETLEEAKK ALHKIIKDKQ QIK
Best Arabidopsis Sequence Match ( AT1G51560.1 )
(BLAST)
001: MDAAIFTSVY VCNIPKTKKA FFNPNPPALS SSSCWLCNSQ AKQIIKLRIR EGSNQGLLRV HALFNNEEAS SESEDKNGFG LLPADIFSLP QEKFGSNVSG
101: EKDSENIIDV ETSLAVPHGG GTRAGLFRTP ISGGVQSATS AHGLPRPALA VRNLMEQARF AHLCTVMSKM HHRREGYPFG SLVDFAPDPM GHPIFSFSPL
201: AIHTRNILAE PRCTLVVQIP GWSCLSNARV TLFGDVYPLP EEQQEWAHKQ YMLKHHQGPS QQWGNFHYFR MQNISDIYFI GGFGTVAWIN VNEYETLQPD
301: KIAVDGGEQN LKELNAIFSK PLRELLSSEA ELDDAAIISI DSKGIDIRVR QGAQFKIQRL AFEESHGVET LEEAKSALWK VIEKGKLHNL QK
Arabidopsis Description
Pyridoxamine 5'-phosphate oxidase family protein [Source:UniProtKB/TrEMBL;Acc:Q9C8K8]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.