CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 2
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021881_P001	Maize	plastid	74.56	89.47
HORVU2Hr1G037680.2	Barley	cytosol	66.67	87.36
Os07t0573800-02	Rice	plastid	78.66	78.66
TraesCS2D01G202700.1	Wheat	plastid	75.15	74.93
TraesCS2A01G184900.1	Wheat	unclear	74.56	74.78
TraesCS2B01G222400.2	Wheat	plastid	74.56	74.34
GSMUA_Achr5P14810_001	Banana	plastid	64.04	65.77
VIT_08s0007g07350.t01	Wine grape	cytosol	52.63	65.22
KRG94835	Soybean	mitochondrion	55.85	58.59
KRH06700	Soybean	mitochondrion	55.56	58.28
PGSC0003DMT400083485	Potato	mitochondrion, plastid	54.68	58.26
Solyc03g063240.2.1	Tomato	plastid	54.39	57.94
Bra031966.1-P	Field mustard	plastid	53.8	57.32
CDY50859	Canola	plastid	53.22	56.7
CDY64899	Canola	plastid	53.22	56.52
AT3G03890.1	Thale cress	plastid	52.63	56.07
KXG25584	Sorghum	plastid	18.13	17.08
EES04519	Sorghum	plastid	18.13	14.73
KXG25583	Sorghum	cytosol, mitochondrion	4.09	13.33

Protein Annotations

KEGG:00750+1.4.3.5	Gene3D:2.30.110.10	Gene3D:3.20.180.10	MapMan:35.2	EntrezGene:8056378	UniProt:C5XCC3
InterPro:DUF2470	EnsemblPlants:EER99589	ProteinID:EER99589	ProteinID:EER99589.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536
GO:GO:0048037	InterPro:Haem_oxidase_HugZ-like_sf	InterPro:IPR012349	InterPro:IPR037119	PFAM:PF01243	PFAM:PF10615
PANTHER:PTHR13343	PANTHER:PTHR13343:SF4	MetaCyc:PWY-7204	MetaCyc:PWY-7282	InterPro:Pyridox_Oxase_put	EnsemblPlantsGene:SORBI_3002G349100
SUPFAM:SSF50475	unigene:Sbi.499	InterPro:Split_barrel_FMN-bd	UniParc:UPI0001A83BAF	RefSeq:XP_002463068.1	SEG:seg

Description

hypothetical protein

Coordinates

chr2:-:71398366..71403715

Molecular Weight (calculated)

37157.0 Da

IEP (calculated)

7.860

GRAVY (calculated)

-0.272

Length

342 amino acids

Sequence
(BLAST)

001: MTMPLLLTPG ARAAPSPSTL SRLLLPLHLQ ITNGRHNHRH GHVSASPLLY PRLRNRRGRF FASSSSSSQM AAPADAPGGS SDAFEVIRVH QAKAARLSPV
101: EEIRTILDRS VRGVLATHSQ DHAGYPSSSM VDFACDQDGS PILAVSSLAV HSKNLSGNPK CSLLVAKDPE DRTDTVITVY GDAVPVSDEE KDSVRSAYLR
201: RHPDAFWVDF GDFSFLHIKP KAVRYVSGVA TALLGSGEFG AAEYKEANVD PISQFSTPIT SHMNKDHADD TKLIVQHSTT VKVDFAYMLD VDSLGFNVKA
301: GYDGSVLKLR IPFPRQAQDR KDVKTLIVEM LQAARASSSD PE

Best Arabidopsis Sequence Match ( AT3G03890.1 )
(BLAST)

001: MKSLVAHFST PLITARLVPR CIIHRASISA VSFSTVRRRF SPLTMASAAQ SSSQAVSYGS GNSDTDVFKL IQAHEEKAAR LSPVEEIRTV LNGSICGMLS
101: TFSQKYEGYP SGSMVDFACD ADGSPILAVS SLAVHTKDLL ANPKCSLLIA RDPEDRTGLR ITLHGDAVLV SEKDQAAVRS AYLAKHPKAF WVDFGDFSFM
201: RIEPKVVRYV SGVATAFLGS GEFSKEEYQA AKVDPIAQYA KPVTSHMNKD HEEDTKAIVH NITSIPVESA LMLDLDSLGF NVKATLQGNT FKLRVPFPRR
301: AQDRKDVKTL IVEMLQAAKS N

Arabidopsis Description

AT3G03890 protein [Source:UniProtKB/TrEMBL;Acc:Q8LDU1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.