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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 5
  • mitochondrion 4
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:plastid
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:plastid
YLoc:mitochondrion
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY50859 Canola plastid 84.74 84.74
Bra031966.1-P Field mustard plastid 83.49 83.49
CDY64899 Canola plastid 81.62 81.37
VIT_08s0007g07350.t01 Wine grape cytosol 62.93 73.19
HORVU2Hr1G037680.2 Barley cytosol 52.34 64.37
KRG94835 Soybean mitochondrion 64.17 63.19
KRH06700 Soybean mitochondrion 62.62 61.66
PGSC0003DMT400083485 Potato mitochondrion, plastid 61.37 61.37
GSMUA_Achr5P14810_001 Banana plastid 63.24 60.96
Solyc03g063240.2.1 Tomato plastid 60.12 60.12
Os07t0573800-02 Rice plastid 56.7 53.22
EER99589 Sorghum plastid 56.07 52.63
TraesCS2A01G184900.1 Wheat unclear 54.52 51.32
TraesCS2D01G202700.1 Wheat plastid 54.83 51.31
TraesCS2B01G222400.2 Wheat plastid 54.52 51.02
Zm00001d021881_P001 Maize plastid 44.24 49.82
AT3G21140.1 Thale cress plastid 24.3 20.16
AT1G51560.1 Thale cress plastid 20.25 16.58
Protein Annotations
KEGG:00750+1.4.3.5Gene3D:2.30.110.10Gene3D:3.20.180.10MapMan:35.2EntrezGene:821082ProteinID:AEE74008.1
ProteinID:AEE74009.1EMBL:AF378894EMBL:AK316665ArrayExpress:AT3G03890EnsemblPlantsGene:AT3G03890RefSeq:AT3G03890
TAIR:AT3G03890RefSeq:AT3G03890-TAIR-GEnsemblPlants:AT3G03890.1TAIR:AT3G03890.1EMBL:AY052741EMBL:AY085802
InterPro:DUF2470GO:GO:0003674GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0009507GO:GO:0009536GO:GO:0048037InterPro:Haem_oxidase_HugZ-like_sfInterPro:IPR012349
InterPro:IPR037119RefSeq:NP_566216.1RefSeq:NP_850509.1PFAM:PF01243PFAM:PF10615PO:PO:0000013
PO:PO:0000037PO:PO:0000084PO:PO:0000230PO:PO:0000293PO:PO:0001016PO:PO:0001017
PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064
PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611
PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010
PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046
PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137
PO:PO:0025022PO:PO:0025281PANTHER:PTHR13343PANTHER:PTHR13343:SF4InterPro:Pyridox_Oxase_putUniProt:Q8LDU1
SUPFAM:SSF50475InterPro:Split_barrel_FMN-bdUniParc:UPI00000A25A2SEG:seg::
Description
AT3G03890 protein [Source:UniProtKB/TrEMBL;Acc:Q8LDU1]
Coordinates
chr3:-:999350..1002595
Molecular Weight (calculated)
35054.0 Da
IEP (calculated)
8.859
GRAVY (calculated)
-0.098
Length
321 amino acids
Sequence
(BLAST)
001: MKSLVAHFST PLITARLVPR CIIHRASISA VSFSTVRRRF SPLTMASAAQ SSSQAVSYGS GNSDTDVFKL IQAHEEKAAR LSPVEEIRTV LNGSICGMLS
101: TFSQKYEGYP SGSMVDFACD ADGSPILAVS SLAVHTKDLL ANPKCSLLIA RDPEDRTGLR ITLHGDAVLV SEKDQAAVRS AYLAKHPKAF WVDFGDFSFM
201: RIEPKVVRYV SGVATAFLGS GEFSKEEYQA AKVDPIAQYA KPVTSHMNKD HEEDTKAIVH NITSIPVESA LMLDLDSLGF NVKATLQGNT FKLRVPFPRR
301: AQDRKDVKTL IVEMLQAAKS N
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.